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CAZyme Information: MGYG000001484_00570

You are here: Home > Sequence: MGYG000001484_00570

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Nigerium massiliense
Lineage Bacteria; Actinobacteriota; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Nigerium; Nigerium massiliense
CAZyme ID MGYG000001484_00570
CAZy Family GH28
CAZyme Description Endo-polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
482 50525.73 8.469
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001484 2934258 Isolate not provided not provided
Gene Location Start: 297932;  End: 299380  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001484_00570.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 61 454 9.3e-73 0.9661538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 8.33e-51 42 377 88 402
Polygalacturonase [Carbohydrate transport and metabolism].
PLN02188 PLN02188 5.99e-34 41 458 41 394
polygalacturonase/glycoside hydrolase family protein
pfam00295 Glyco_hydro_28 1.65e-25 214 455 85 316
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 4.36e-23 42 383 73 355
polygalacturonase ADPG
PLN03010 PLN03010 2.49e-21 41 384 51 321
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
APT58997.1 2.18e-113 43 476 36 457
AWV20899.1 1.86e-111 41 476 63 478
QET94657.1 2.05e-110 41 476 51 466
ATR22288.1 2.05e-110 41 476 51 466
AFW03263.1 5.79e-107 31 481 45 464

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1BHE_A 2.39e-32 53 454 26 372
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
3JUR_A 2.29e-26 42 450 33 420
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
2UVE_A 6.61e-16 42 373 162 490
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
6KVE_A 1.85e-12 207 450 101 336
ChainA, Endo-polygalacturonase [Evansstolkia leycettana]
7E56_A 4.18e-12 207 450 93 328
ChainA, Endo-polygalacturonase [Evansstolkia leycettana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P18192 4.14e-32 53 455 52 399
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
P26509 2.02e-31 53 454 52 398
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
A7PZL3 1.69e-30 42 467 68 453
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P35339 1.99e-23 41 446 45 386
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1
P58598 3.76e-23 46 383 68 401
Polygalacturonase OS=Ralstonia solanacearum (strain GMI1000) OX=267608 GN=pglA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000304 0.998959 0.000158 0.000236 0.000163 0.000149

TMHMM  Annotations      download full data without filtering help

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