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CAZyme Information: MGYG000001485_00422

You are here: Home > Sequence: MGYG000001485_00422

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pseudomonas_E massiliensis
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E massiliensis
CAZyme ID MGYG000001485_00422
CAZy Family GT73
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
264 29570.89 9.8595
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001485 4723534 Isolate not provided not provided
Gene Location Start: 142834;  End: 143628  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001485_00422.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT73 18 246 9.1e-61 0.9755102040816327

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK09822 PRK09822 6.03e-22 22 255 24 264
lipopolysaccharide core biosynthesis protein; Provisional
pfam01973 MAF_flag10 5.04e-06 21 182 27 166
Protein of unknown function DUF115. This family of archaebacterial proteins has no known function.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QEU02615.1 1.92e-87 11 259 5 253
QDD87570.1 2.21e-86 11 259 5 253
APQ14064.1 2.55e-85 11 259 5 253
AXA68997.1 6.95e-81 1 250 1 247
QNQ98890.1 1.72e-79 3 250 13 260

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27241 1.24e-17 22 243 24 252
Lipopolysaccharide core biosynthesis protein RfaZ OS=Escherichia coli (strain K12) OX=83333 GN=rfaZ PE=4 SV=2
P26473 1.84e-16 23 255 25 264
Lipopolysaccharide core biosynthesis protein RfaZ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rfaZ PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000061 0.000003 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001485_00422.