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CAZyme Information: MGYG000001485_00457
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_E massiliensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E massiliensis | |||||||||||
| CAZyme ID | MGYG000001485_00457 | |||||||||||
| CAZy Family | PL7 | |||||||||||
| CAZyme Description | Alginate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 180810; End: 181484 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL7 | 2 | 220 | 5.4e-103 | 0.9954337899543378 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam08787 | Alginate_lyase2 | 7.73e-74 | 2 | 220 | 1 | 222 | Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| BBP62035.1 | 1.11e-106 | 1 | 222 | 1 | 222 |
| AUM72271.1 | 1.53e-106 | 1 | 220 | 1 | 220 |
| QXH94567.1 | 1.58e-106 | 1 | 222 | 1 | 222 |
| SIR49666.1 | 3.19e-106 | 1 | 220 | 1 | 220 |
| AVU78169.1 | 3.19e-106 | 1 | 220 | 1 | 220 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1VAV_A | 2.39e-58 | 3 | 220 | 2 | 221 | Crystalstructure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution [Pseudomonas aeruginosa PAO1],1VAV_B Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution [Pseudomonas aeruginosa PAO1] |
| 2CWS_A | 1.05e-29 | 3 | 220 | 11 | 227 | Crystalstructure at 1.0 A of alginate lyase A1-II', a member of polysaccharide lyase family-7 [Sphingomonas sp. A1],2Z42_A Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 [Sphingomonas sp.] |
| 2ZA9_A | 3.99e-29 | 3 | 220 | 10 | 226 | ChainA, Alginate lyase [unidentified] |
| 2ZAB_A | 3.99e-29 | 3 | 220 | 10 | 226 | ChainA, Alginate lyase [Sphingomonas sp. A1],2ZAC_A Chain A, Alginate lyase [Sphingomonas sp. A1] |
| 2ZAA_A | 4.29e-28 | 3 | 220 | 10 | 226 | ChainA, Alginate lyase [Sphingomonas sp. A1] |
Swiss-Prot Hits help
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000063 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |