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CAZyme Information: MGYG000001485_03511

You are here: Home > Sequence: MGYG000001485_03511

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pseudomonas_E massiliensis
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E massiliensis
CAZyme ID MGYG000001485_03511
CAZy Family PL7
CAZyme Description Alginate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
222 24311.61 9.5049
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001485 4723534 Isolate not provided not provided
Gene Location Start: 1486113;  End: 1486781  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.3

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL7 2 218 3.5e-94 0.9954337899543378

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam08787 Alginate_lyase2 8.43e-71 2 218 1 222
Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDW01432.1 6.34e-110 1 222 1 222
AXH55967.1 6.34e-110 1 222 1 222
QOI05747.1 6.34e-110 1 222 1 222
QWA52836.1 6.34e-110 1 222 1 222
ARA83805.1 6.34e-110 1 222 1 222

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1VAV_A 6.62e-55 4 218 3 221
Crystalstructure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution [Pseudomonas aeruginosa PAO1],1VAV_B Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution [Pseudomonas aeruginosa PAO1]
4OZX_A 5.33e-14 4 218 9 281
ChainA, Alginate lyase [Klebsiella pneumoniae]
5ZU5_A 1.59e-07 7 218 249 508
Crystalstructure of a full length alginate lyase with CBM domain [Vibrio splendidus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q59478 3.52e-13 4 218 31 303
Alginate lyase OS=Klebsiella pneumoniae OX=573 GN=alyA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999951 0.000074 0.000007 0.000000 0.000000 0.000001

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001485_03511.