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CAZyme Information: MGYG000001485_04225
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas_E massiliensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas_E; Pseudomonas_E massiliensis | |||||||||||
| CAZyme ID | MGYG000001485_04225 | |||||||||||
| CAZy Family | PL7 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2254073; End: 2255017 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL7 | 2 | 225 | 3.5e-53 | 0.9954337899543378 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam08787 | Alginate_lyase2 | 1.31e-53 | 2 | 225 | 1 | 222 | Alginate lyase. Alginate lyases are enzymes that degrade the linear polysaccharide alignate. They cleave the glycosidic linkage of alignate through a beta-elimination reaction. This family forms an all beta fold and is different to all alpha fold of pfam05426. |
| pfam14099 | Polysacc_lyase | 2.63e-04 | 104 | 213 | 87 | 204 | Polysaccharide lyase. This family includes heparin lyase I, EC:4.2.2.7. Heparin lyase I depolymerizes heparin by cleaving the glycosidic linkage next to an iduronic acid moiety. The structure of heparin lyase I consists of a beta-jelly roll domain with a long, deep substrate-binding groove and an unusual thumb domain containing many basic residues extending from the main body of the enzyme. This family also includes glucuronan lyase, EC:4.2.2.14. The structure glucuronan lyase is a beta-jelly roll. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ACO79344.1 | 7.44e-75 | 1 | 233 | 1 | 224 |
| AGK13249.1 | 7.44e-75 | 1 | 233 | 1 | 224 |
| AGK17538.1 | 7.44e-75 | 1 | 233 | 1 | 224 |
| AJE21138.1 | 3.33e-73 | 1 | 225 | 1 | 216 |
| QQE87281.1 | 3.33e-73 | 1 | 225 | 1 | 216 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1VAV_A | 3.76e-34 | 3 | 225 | 2 | 221 | Crystalstructure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution [Pseudomonas aeruginosa PAO1],1VAV_B Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution [Pseudomonas aeruginosa PAO1] |
| 2CWS_A | 7.75e-23 | 3 | 225 | 11 | 227 | Crystalstructure at 1.0 A of alginate lyase A1-II', a member of polysaccharide lyase family-7 [Sphingomonas sp. A1],2Z42_A Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 [Sphingomonas sp.] |
| 2ZAB_A | 2.81e-22 | 3 | 225 | 10 | 226 | ChainA, Alginate lyase [Sphingomonas sp. A1],2ZAC_A Chain A, Alginate lyase [Sphingomonas sp. A1] |
| 2ZA9_A | 2.00e-21 | 3 | 225 | 10 | 226 | ChainA, Alginate lyase [unidentified] |
| 2ZAA_A | 2.77e-21 | 3 | 225 | 10 | 226 | ChainA, Alginate lyase [Sphingomonas sp. A1] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q59478 | 4.20e-15 | 3 | 226 | 30 | 304 | Alginate lyase OS=Klebsiella pneumoniae OX=573 GN=alyA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000027 | 0.000024 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |