CAZyme Information: MGYG000001489_02653

Basic Information

• Species: Parabacteroides goldsteinii
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides goldsteinii
• CAZyme ID: MGYG000001489_02653
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
999		111629.02	9.0583

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001489	6453137	Isolate	not provided	not provided

• Gene Location: Start: 3500707; End: 3503706 Strand: -

Full Sequence      

MRKILTMLLCSVCLLTAKAQTIPNMYRNVDQAKMNHWVDSVFDKMSYDERIGQLFMVISE
PKSDNRTMQRLMRYVNEIKLGGILFHKGNPVTQAEVTNRLQKASRVPMFVSLDGEWGLSM
RLSGTTRFPKNMMLGAIEDDKLITEYGKEVARQCKEMGIQINFAPDIDVNSNTDNPVIGL
RSFGENPRAVADKGIAYARGLETAGIISVAKHFPGHGDTSDDSHNTLPAVHHDRARLDSV
ELYPFKRYIYDGYAGVMTGHLYVPALDKTRNLPSSFSRPIVTGLLQEELGFRGLCFTDAL
AMKGATTKKSDNPSVKALLAGNDILLAPAAPINDFTAVKEAIDEGILSIEDIEAKCIKIL
QYKYITGLDKYRPIETKGLSKRLNSPHAAWLAAKLNAEAITLLKNESDMVPLRQLDKKKI
AALSIGSPAGNEFQEMLGRYDSIACFSISRSSTAAQIQHVYRQLEKYDVIICGVHTVRIP
ESLQLRQLATKKELVYAFFTLPYFCKEYKSSIMKAKAVVMGYEGTPLAQEYAAQVIFGGI
PAKGKLPVTIPGVFHAGAGIFTEKTRLGYHEPEEVGANPIRLDVIGSIAEEGLEEKAYPG
CQVLVAKDGMIIYDKAFGYFDYGQSRKVQENSVYDLASASKAAGTLLAVMKAYDEKKFTL
NNKIADFLPELKGSNKKDLNIKELLYHQSGVVSTINFYLNAIDKDSYKGSLYSSVKNATH
PVRFDAKTYVRNDFNYLPDLVSTEKKPGFTTEVARNFYLHDSFKDSIMQEIKDSRLGTRG
KYVYSCVNFIMLKMMVENQMKQPMDQLLHNDFYSRLGAWHTTYNPLKRIDSLQIVPTEND
QFVRRQLLRGYVHDEAAAFQGGVSGNAGLFSNANDLAKVLQLFLNQGTYGNEQYLSTETC
RLFTQSKSPTSRRGLGFDKPAPGTHKGSPCSSLTPPSVYGHTGFTGTCFWVDPDNQLLYI
FLCNRVNPSRANNKLSQLDIRKRIQDAIYKAIDRKSQKD

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	101	326	3.6e-55	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	5.13e-70	45	431	1	366	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	1.77e-67	48	360	3	314	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	1.65e-55	570	992	28	431	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	9.42e-39	587	968	3	311	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	2.10e-32	572	974	28	372	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QIX64335.1	0.0	1	999	1	998
QUT21701.1	0.0	1	999	1	998
BBK92319.1	0.0	1	999	1	998
QJE31090.1	0.0	1	999	1	998
QCY58561.1	0.0	1	999	1	998

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	1.02e-62	39	569	36	632	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	2.94e-62	39	569	10	606	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	5.38e-62	39	569	40	636	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
6K5J_A	1.32e-59	45	550	11	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A	5.40e-52	62	363	44	346	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	5.61e-62	39	569	36	632	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	6.82e-48	60	550	39	596	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	6.81e-40	572	965	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	2.27e-39	572	965	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
Q7WUL3	1.11e-37	37	430	18	419	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000265	0.998955	0.000258	0.000160	0.000155	0.000144

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001489_02653.