CAZyme Information: MGYG000001489_04294

Basic Information

• Species: Parabacteroides goldsteinii
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides goldsteinii
• CAZyme ID: MGYG000001489_04294
• CAZy Family: CBM50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
599		67879.55	7.0759

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001489	6453137	Isolate	not provided	not provided

• Gene Location: Start: 1946615; End: 1948414 Strand: +

Full Sequence      

MNKISIYVLTLCLSFSAVSLYSQNNRARIITTNELNDNIFYHTIERGQTVYSIATMYGVT
VDDIYRLNPESRESIKAGATLKIPQKDVSSAPMGNAEDNYLYHTIQPKETLYSLSVRYKV
PGPDIIAANPGLSVSSFTIGKTIRIPATPIETLPTTDIKTVTKEIEYTIAKKETMYRICR
KFNVSSAELLQRNPELKNGVKAGMVIKIPVETKETVTETAPAMHERDVNALLSTPQKIKH
VNMIKVALLLPFMTNEATPSSNTLRFIEYYEGMLLAVDSLRNSGCSIELSVFDTGNGTKK
VKEILKEDALKEANLIIGAVQNDQIAPVAEFAEKNNIKYVIPFTSKNDDVLSNAHVYQVN
TPHSYLYAKASQAGCDLFGNDNIIFVKVPGIEEKTDFIKAFKTEMKQRNIAWRELTYSAE
TFPVEMEAMLSTDKRSVIIPTSDSLDALNKLKSPLRMLAESKPECNITLFGYPVWQTYTR
ECLDDFFALNTYIYSNFYADNLSPEVADFYSKYKTWYSKNLINTFPKYGILGFDTGMFFF
DAIKKYGSNFENNLDKIRYKSIQTGFDFERVNNWGGFINTNIFIVHYQSDFNVTRSEVR

Enzyme Prediction     

No EC number prediction in MGYG000001489_04294.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd00118	LysM	7.70e-10	41	83	2	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476	LysM	1.63e-07	42	84	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
smart00257	LysM	5.80e-07	41	83	1	44	Lysin motif.
cd06347	PBP1_ABC_LivK_ligand_binding-like	8.27e-07	490	548	241	295	type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
COG1388	LysM	1.24e-06	114	222	1	124	LysM repeat [Cell wall/membrane/envelope biogenesis].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT48586.1	0.0	1	599	1	600
QUR46882.1	0.0	1	599	1	602
QKH97147.1	0.0	1	599	1	602
BBK90862.1	0.0	1	599	1	602
QUT95613.1	0.0	1	599	1	602

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O05495	3.33e-07	39	147	1	94	Putative sporulation-specific glycosylase YdhD OS=Bacillus subtilis (strain 168) OX=224308 GN=ydhD PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.002238	0.996120	0.000982	0.000216	0.000206	0.000203

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001489_04294.