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CAZyme Information: MGYG000001507_00994

You are here: Home > Sequence: MGYG000001507_00994

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus ihuae
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus ihuae
CAZyme ID MGYG000001507_00994
CAZy Family CBM22
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
2052 221398.19 4.5012
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001507 6631509 Isolate not provided not provided
Gene Location Start: 1070285;  End: 1076443  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.8 3.2.1.-

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH10 367 696 9e-100 0.9867986798679867
GH10 1081 1411 2e-99 0.9900990099009901
CBM9 723 895 8.6e-57 0.9945054945054945
CBM9 1438 1610 5.4e-56 0.9945054945054945
CBM22 206 334 1.5e-31 0.9465648854961832

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00331 Glyco_hydro_10 8.29e-111 1082 1411 2 310
Glycosyl hydrolase family 10.
pfam00331 Glyco_hydro_10 1.13e-110 367 696 2 310
Glycosyl hydrolase family 10.
smart00633 Glyco_10 2.56e-97 406 694 1 263
Glycosyl hydrolase family 10.
smart00633 Glyco_10 2.02e-91 1121 1409 1 263
Glycosyl hydrolase family 10.
cd00005 CBM9_like_1 4.46e-91 713 896 1 185
DOMON-like type 9 carbohydrate binding module of xylanases. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. The CBM9 domain frequently occurs in tandem repeats; members found in this subfamily typically co-occur with glycosyl hydrolase family 10 domains and are annotated as endo-1,4-beta-xylanases. CBM9 from Thermotoga maritima xylanase 10A is reported to have specificity for polysaccharide reducing ends.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QSF46386.1 0.0 1 2052 1 1339
AIQ51609.1 0.0 1 2052 1 1340
AIQ45999.1 0.0 1 2052 1 1340
AIQ57217.1 0.0 1 2052 1 1343
AIQ28411.1 0.0 1 2052 1 1346

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3RDK_A 1.67e-179 363 699 4 340
Proteincrystal structure of xylanase A1 of Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RDK_B Protein crystal structure of xylanase A1 of Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_A Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_B Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_C Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_D Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_E Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_F Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_G Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_H Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],4E4P_A Second native structure of Xylanase A1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],4E4P_B Second native structure of Xylanase A1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2]
3W24_A 3.17e-72 1074 1411 2 325
Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from Thermoanaerobacterium saccharolyticum JW/SL-YS485 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
3W27_A 2.01e-71 1074 1411 2 325
Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylobiose [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3W28_A The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylotriose [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3W29_A The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylotetraose [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
3W25_A 2.01e-71 1074 1411 2 325
Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E146A mutant with xylobiose [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3W26_A The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E146A mutant with xylotriose [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
4HU8_A 4.15e-71 1077 1410 95 441
CrystalStructure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_B Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_C Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_D Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_E Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_F Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_G Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_H Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
C6CRV0 0.0 38 2052 189 1461
Endo-1,4-beta-xylanase A OS=Paenibacillus sp. (strain JDR-2) OX=324057 GN=xynA1 PE=1 SV=1
P38535 2.68e-123 208 900 45 899
Exoglucanase XynX OS=Acetivibrio thermocellus OX=1515 GN=xynX PE=3 SV=1
P36917 3.13e-121 922 1614 202 1046
Endo-1,4-beta-xylanase A OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynA PE=1 SV=1
Q60042 5.22e-106 804 1610 77 1053
Endo-1,4-beta-xylanase A OS=Thermotoga neapolitana OX=2337 GN=xynA PE=1 SV=1
Q60037 2.73e-104 936 1610 222 1057
Endo-1,4-beta-xylanase A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=xynA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000278 0.998974 0.000191 0.000186 0.000178 0.000161

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001507_00994.