logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001514_03324

You are here: Home > Sequence: MGYG000001514_03324

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus_A ihumii
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus_A; Paenibacillus_A ihumii
CAZyme ID MGYG000001514_03324
CAZy Family GH24
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1590 MGYG000001514_12|CGC35 180819.81 6.9335
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001514 5923787 Isolate not provided not provided
Gene Location Start: 1946460;  End: 1951232  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001514_03324.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR03696 Rhs_assc_core 4.96e-26 1432 1511 1 76
RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
COG3209 RhsA 1.04e-22 854 1526 13 674
Uncharacterized conserved protein RhsA, contains 28 RHS repeats [General function prediction only].
pfam05593 RHS_repeat 3.85e-06 1246 1280 1 36
RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain.
pfam05593 RHS_repeat 4.52e-05 968 1001 1 34
RHS Repeat. RHS proteins contain extended repeat regions. These repeats often appear to be involved in ligand binding. Note that this model may not find all the repeats in a protein and that it covers two RHS repeats. The 3D structure of an RHS-repeat-containing protein (the B and C components of an ABC toxin complex) has been determined. The RHS repeats form an extended strip of beta-sheet that spirals around to form a hollow shell, encapsulating the variable C-terminal domain.
TIGR01643 YD_repeat_2x 6.50e-05 968 1008 1 41
YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AIQ73013.1 5.81e-217 41 1512 267 1661
AKG34398.1 3.14e-206 41 1512 95 1481
ATW25288.1 2.62e-46 1185 1513 31 390
ATW25292.1 1.00e-44 1246 1513 21 323
ATW25294.1 1.03e-35 1281 1513 503 721

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7BAN_A 1.14e-13 639 1504 743 1625
ChainA, Teneurin-4 [Homo sapiens],7BAN_B Chain B, Teneurin-4 [Homo sapiens],7BAO_A Chain A, Teneurin-4 [Homo sapiens]
7BAM_A 1.14e-13 639 1504 743 1625
ChainA, Teneurin-4 [Homo sapiens],7BAM_B Chain B, Teneurin-4 [Homo sapiens]
7Q97_A 3.06e-11 1183 1511 954 1289
ChainA, Rhs family protein [Pseudomonas protegens Pf-5],7Q97_B Chain B, Rhs family protein [Pseudomonas protegens Pf-5]
6CMX_A 1.26e-10 1035 1504 1227 1691
HumanTeneurin 2 extra-cellular region [Homo sapiens]
6VHH_A 1.26e-10 1035 1504 1150 1614
HumanTeneurin-2 and human Latrophilin-3 binary complex [Homo sapiens]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
G4NYJ6 2.05e-35 1187 1512 1841 2187
tRNA3(Ser)-specific nuclease WapA OS=Bacillus spizizenii (strain DSM 15029 / JCM 12233 / NBRC 101239 / NRRL B-23049 / TU-B-10) OX=1052585 GN=wapA PE=1 SV=1
Q07833 1.36e-34 1187 1512 1841 2187
tRNA nuclease WapA OS=Bacillus subtilis (strain 168) OX=224308 GN=wapA PE=1 SV=2
D4G3R4 2.58e-29 1150 1512 1845 2200
tRNA(Glu)-specific nuclease WapA OS=Bacillus subtilis subsp. natto (strain BEST195) OX=645657 GN=wapA PE=1 SV=2
E0SGL7 6.10e-15 1021 1520 1069 1544
Putative deoxyribonuclease RhsC OS=Dickeya dadantii (strain 3937) OX=198628 GN=rhsC PE=1 SV=1
P0DUH5 1.00e-14 1031 1511 695 1287
Double-stranded DNA deaminase toxin A OS=Burkholderia cenocepacia (strain H111) OX=1055524 GN=dddA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000262 0.999085 0.000193 0.000155 0.000155 0.000143

TMHMM  Annotations      download full data without filtering help

start end
7 29