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CAZyme Information: MGYG000001523_00725
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Gracilibacillus massiliensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes; Bacilli; Bacillales_D; Amphibacillaceae; Gracilibacillus; Gracilibacillus massiliensis | |||||||||||
| CAZyme ID | MGYG000001523_00725 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 296309; End: 297880 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 133 | 505 | 2.2e-68 | 0.9661538461538461 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG5434 | Pgu1 | 2.65e-73 | 27 | 521 | 4 | 529 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| PLN03010 | PLN03010 | 5.67e-22 | 109 | 468 | 45 | 356 | polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 6.33e-21 | 210 | 456 | 51 | 273 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| PLN03003 | PLN03003 | 1.82e-20 | 108 | 437 | 21 | 310 | Probable polygalacturonase At3g15720 |
| PLN02218 | PLN02218 | 1.88e-19 | 113 | 498 | 70 | 421 | polygalacturonase ADPG |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AFH61358.1 | 4.12e-224 | 18 | 521 | 8 | 511 |
| AFC29187.1 | 1.18e-223 | 18 | 521 | 8 | 511 |
| AIQ45845.1 | 7.28e-221 | 19 | 519 | 9 | 510 |
| AIQ57019.1 | 7.11e-219 | 17 | 519 | 4 | 509 |
| AIQ51483.1 | 8.47e-210 | 19 | 519 | 9 | 510 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2UVE_A | 2.91e-38 | 21 | 402 | 38 | 484 | Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica] |
| 5OLP_A | 1.18e-36 | 109 | 506 | 43 | 447 | Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482] |
| 3JUR_A | 2.34e-34 | 109 | 407 | 26 | 350 | Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima] |
| 1BHE_A | 2.39e-17 | 127 | 407 | 26 | 303 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
| 4C2L_A | 4.92e-11 | 120 | 413 | 25 | 299 | Crystalstructure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P15922 | 6.09e-36 | 17 | 373 | 29 | 448 | Exo-poly-alpha-D-galacturonosidase OS=Dickeya chrysanthemi OX=556 GN=pehX PE=1 SV=1 |
| A7PZL3 | 8.00e-33 | 107 | 484 | 59 | 422 | Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1 |
| Q9LW07 | 1.89e-22 | 108 | 437 | 21 | 310 | Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1 |
| P26216 | 5.46e-22 | 97 | 485 | 27 | 379 | Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1 |
| P35338 | 7.36e-22 | 97 | 485 | 27 | 379 | Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000057 | 0.000001 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |