logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001526_00523

You are here: Home > Sequence: MGYG000001526_00523

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus_A senegalimassiliensis
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus_A; Paenibacillus_A senegalimassiliensis
CAZyme ID MGYG000001526_00523
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
691 MGYG000001526_11|CGC1 74021.95 5.7249
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001526 5059338 Isolate not provided not provided
Gene Location Start: 46490;  End: 48565  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001526_00523.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM77 585 686 9.8e-48 0.9805825242718447
PL1 237 403 1.7e-43 0.8168316831683168

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.42e-53 177 517 49 340
Pectate lyase [Carbohydrate transport and metabolism].
pfam18283 CBM77 2.84e-46 582 688 1 108
Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan.
smart00656 Amb_all 1.66e-32 240 401 17 186
Amb_all domain.
pfam00544 Pec_lyase_C 1.87e-21 238 401 33 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACX62589.1 0.0 1 691 1 683
AYB46946.1 0.0 1 691 1 685
QOT09127.1 0.0 1 691 1 685
AET58470.1 0.0 1 691 1 716
CQR51569.1 0.0 1 690 1 728

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5FU5_A 1.75e-34 578 689 2 112
Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens]
3VMV_A 1.36e-23 185 401 27 246
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A 2.88e-21 236 401 129 330
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1PCL_A 2.87e-19 199 445 42 309
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
2QY1_A 1.65e-18 228 410 66 255
ChainA, Pectate lyase II [Xanthomonas campestris pv. campestris],2QY1_B Chain B, Pectate lyase II [Xanthomonas campestris pv. campestris]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q65DC2 2.60e-24 177 410 55 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
B1B6T1 2.60e-24 177 410 55 281
Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
Q8GCB2 2.60e-24 177 410 55 281
Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
P04959 1.17e-22 246 446 115 314
Pectate lyase B OS=Dickeya chrysanthemi OX=556 GN=pelB PE=3 SV=1
P0C1C3 2.81e-22 204 448 72 326
Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000297 0.998955 0.000180 0.000224 0.000174 0.000156

TMHMM  Annotations      download full data without filtering help

start end
9 31