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CAZyme Information: MGYG000001526_00591

You are here: Home > Sequence: MGYG000001526_00591

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus_A senegalimassiliensis
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus_A; Paenibacillus_A senegalimassiliensis
CAZyme ID MGYG000001526_00591
CAZy Family CBM22
CAZyme Description Endo-1,4-beta-xylanase A
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
906 MGYG000001526_11|CGC5 98711.07 4.2216
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001526 5059338 Isolate not provided not provided
Gene Location Start: 136884;  End: 139604  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.8 3.2.1.-

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH10 366 696 1.5e-102 0.9900990099009901
CBM9 724 895 3.9e-54 0.989010989010989
CBM22 206 334 6.1e-31 0.9465648854961832

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00331 Glyco_hydro_10 1.14e-117 366 696 1 310
Glycosyl hydrolase family 10.
smart00633 Glyco_10 1.59e-99 406 694 1 263
Glycosyl hydrolase family 10.
cd00005 CBM9_like_1 1.93e-90 714 896 2 185
DOMON-like type 9 carbohydrate binding module of xylanases. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. The CBM9 domain frequently occurs in tandem repeats; members found in this subfamily typically co-occur with glycosyl hydrolase family 10 domains and are annotated as endo-1,4-beta-xylanases. CBM9 from Thermotoga maritima xylanase 10A is reported to have specificity for polysaccharide reducing ends.
COG3693 XynA 2.02e-73 396 696 57 339
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
pfam06452 CBM9_1 7.06e-69 724 896 2 182
Carbohydrate family 9 binding domain-like. CBM9_1 is a C-terminal domain on bacterial xylanase proteins, and it is tandemly repeated in a number of family-members. The CBM9 module binds to amorphous and crystalline cellulose and a range of soluble di- and monosaccharides as well as to cello- and xylo- oligomers of different degrees of polymerization. Comparison of the glucose and cellobiose complexes during crystallisation reveals surprising differences in binding of these two substrates by CBM9-2. Cellobiose was found to bind in a distinct orientation from glucose, while still maintaining optimal stacking and electrostatic interactions with the reducing end sugar.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ARD08052.1 0.0 3 898 3 898
ANY73387.1 0.0 1 905 1 908
ANA80457.1 0.0 6 902 6 904
AVV55472.1 0.0 6 902 6 904
AWP30060.1 0.0 6 905 6 907

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3RDK_A 4.19e-181 363 697 4 338
Proteincrystal structure of xylanase A1 of Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RDK_B Protein crystal structure of xylanase A1 of Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_A Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_B Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_C Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_D Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_E Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_F Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_G Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],3RO8_H Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],4E4P_A Second native structure of Xylanase A1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2],4E4P_B Second native structure of Xylanase A1 from Paenibacillus sp. JDR-2 [Paenibacillus sp. JDR-2]
3W24_A 1.63e-70 359 705 2 334
Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from Thermoanaerobacterium saccharolyticum JW/SL-YS485 [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
3W25_A 1.15e-69 359 705 2 334
Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E146A mutant with xylobiose [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3W26_A The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E146A mutant with xylotriose [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
3W27_A 1.15e-69 359 705 2 334
Thehigh-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylobiose [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3W28_A The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylotriose [Thermoanaerobacterium saccharolyticum JW/SL-YS485],3W29_A The high-resolution crystal structure of TsXylA, intracellular xylanase from /Thermoanaerobacterium saccharolyticum JW/SL-YS485/: the complex of the E251A mutant with xylotetraose [Thermoanaerobacterium saccharolyticum JW/SL-YS485]
4HU8_A 2.99e-66 322 695 52 441
CrystalStructure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_B Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_C Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_D Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_E Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_F Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_G Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes],4HU8_H Crystal Structure of a Bacterial Ig-like Domain Containing GH10 Xylanase from Termite Gut [Globitermes brachycerastes]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
C6CRV0 0.0 39 902 189 1056
Endo-1,4-beta-xylanase A OS=Paenibacillus sp. (strain JDR-2) OX=324057 GN=xynA1 PE=1 SV=1
P36917 7.97e-130 78 900 74 1047
Endo-1,4-beta-xylanase A OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynA PE=1 SV=1
P38535 2.85e-128 208 900 45 899
Exoglucanase XynX OS=Acetivibrio thermocellus OX=1515 GN=xynX PE=3 SV=1
Q60042 1.30e-106 177 895 183 1053
Endo-1,4-beta-xylanase A OS=Thermotoga neapolitana OX=2337 GN=xynA PE=1 SV=1
Q60037 1.90e-105 78 895 86 1057
Endo-1,4-beta-xylanase A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=xynA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000277 0.998981 0.000197 0.000193 0.000164 0.000155

TMHMM  Annotations      download full data without filtering help

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