CAZyme Information: MGYG000001529_02035

Basic Information

• Species: Gabonibacter massiliensis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Marinifilaceae; Gabonibacter; Gabonibacter massiliensis
• CAZyme ID: MGYG000001529_02035
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1000	MGYG000001529_7|CGC8	111768.04	9.2286

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001529	3396579	Isolate	not provided	not provided

• Gene Location: Start: 1360582; End: 1363584 Strand: +

Full Sequence      

MYKILLNLVICLLISHTIWGQDAIGKVDSILSTMTLDQKIGQLFMIAAYSNKDADYEKEL
EETITRYHVGGIIFFQGSPVRQALMTNHLQQLSSIPLLIGMDAESGLGWRIKQAMEFPNQ
TLLGAIRDNDLIYRIGQSIGEDCRLLGVHVNFAPVVDINTNPKNPIIGIRSFGEKKKNVS
QKSIAYMQGLSSQNVMAVAKHFPGHGDTDVDSHLALPLIKFPATRLDSVELYPFKELIEA
GVPGVMVSHLNVPAYDTANLPASLSPRIVTELLRNQLRFEGLCFTDAMNMKGVTLGRAKG
KADLLALMAGNNVLLFPENIAASIKKIKEAIKNGKVSEELIHERCRQLLLAKEKYIMPSY
YPIDTNRLIQRLNTPQDSGILQTAYAKAITLIKNNDLLLPFTKLDTLRMASLNFGDRKAT
AFENMLSNYAPCDHFSISNEASPEKIQQLLKKLASYNCIIIYNSAARNSMARQFGASLQL
SNIIKKLKGKRLVLCHPATPYGVDLYSYLPVDAILISYSHDLPAQEFSAQALFGGIRIEG
KLPVSINLSYPAGTGLTTPKIRLGYHLPVLSGMDNFVLQRIDSICQAAIQAEATPGCEVL
VAKDGYIVYNKAFGYHTYQKKKPNRTNDIYDIASVTKIAATLPTTMMLYDEKKIALDSPI
SRYYPPIIQTNKANITIREILLHMAALKPAVSFFYHAIDKGKLSGRLFSPRRTKENCQKL
RERLYLNPHFSYRDSTFCHEPREDYTLISPHFYIHKQFRDSIHEILLNSELLPQKKYAYS
DIGFVLLKDISESQTSTSFDRFCKEQLFKRIGANNTAFQAYRTLNPERIVPSAEDQVFRK
SLLKGYVHDPIAALLNGISGNAGLFTNTGDLAKIMAMYLNHGEYGGERFIDSATVALFTS
TQLPAKLNRRGLGFDKPEQDASKTSPACAAAPLSSYGHSGFTGTIAWNDPDNKMIYIFLS
NRTFPNEYNDKLIQENIRTKIQEVLYKALSTPTQAPLYTP

Enzyme Prediction     

No EC number prediction in MGYG000001529_02035.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	93	315	4.6e-56	0.9629629629629629

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	2.22e-81	35	349	1	314	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	8.39e-76	34	403	1	352	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00144	Beta-lactamase	6.05e-38	581	972	1	318	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
PRK03642	PRK03642	4.16e-36	566	962	28	395	putative periplasmic esterase; Provisional
COG1680	AmpC	1.00e-35	542	966	9	367	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AZS31299.1	0.0	1	989	1	989
QRO49790.1	0.0	1	989	1	989
SNV44480.1	0.0	28	989	32	993
ADY34197.1	0.0	28	989	32	993
BAX80990.1	3.19e-284	28	989	47	1012

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	4.31e-66	28	401	36	447	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
3LK6_A	1.23e-65	28	401	10	421	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
4GYJ_A	2.31e-65	28	401	40	451	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
6K5J_A	1.56e-63	34	549	11	534	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A	5.46e-63	31	362	12	358	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	2.36e-65	28	401	36	447	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	1.81e-52	59	547	54	597	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
Q7WUL3	1.27e-44	21	403	13	400	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1
Q0AF74	1.60e-32	69	315	28	281	Beta-hexosaminidase OS=Nitrosomonas eutropha (strain DSM 101675 / C91 / Nm57) OX=335283 GN=nagZ PE=3 SV=1
B5BB26	1.51e-30	572	972	34	405	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella paratyphi A (strain AKU_12601) OX=554290 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000349	0.999011	0.000173	0.000142	0.000144	0.000145

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001529_02035.