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CAZyme Information: MGYG000001533_02396

You are here: Home > Sequence: MGYG000001533_02396

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Corynebacterium ammoniagenes
Lineage Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium ammoniagenes
CAZyme ID MGYG000001533_02396
CAZy Family CE1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
643 MGYG000001533_1|CGC18 70142.58 4.4654
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001533 2790185 Isolate not provided not provided
Gene Location Start: 2572390;  End: 2574321  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001533_02396.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE1 107 370 7.7e-51 0.9515418502202643

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0627 FrmB 6.55e-63 109 375 56 314
S-formylglutathione hydrolase FrmB [Defense mechanisms].
COG5479 Psp3 1.07e-44 400 642 112 371
Uncharacterized conserved protein, contains LGFP repeats [Function unknown].
pfam00756 Esterase 1.73e-35 99 365 1 242
Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.
pfam08310 LGFP 8.59e-20 452 503 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].
pfam08310 LGFP 1.27e-13 559 609 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
APT83559.1 0.0 1 643 1 643
AQS74898.1 0.0 1 643 1 643
APT95983.1 0.0 1 643 1 646
AHI21185.1 0.0 1 643 3 645
AQX71989.1 0.0 1 643 1 651

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SX4_AAA 8.97e-242 67 640 37 608
ChainAAA, Protein PS1 [Corynebacterium glutamicum],6SX4_BBB Chain BBB, Protein PS1 [Corynebacterium glutamicum],6SX4_CCC Chain CCC, Protein PS1 [Corynebacterium glutamicum],6SX4_DDD Chain DDD, Protein PS1 [Corynebacterium glutamicum]
6SWZ_AAA 2.12e-85 399 640 7 246
ChainAAA, Protein PS1 [Corynebacterium glutamicum]
7MYG_A 2.17e-41 128 362 30 265
ChainA, Diacylglycerol acyltransferase [Mycobacterium tuberculosis],7MYG_B Chain B, Diacylglycerol acyltransferase [Mycobacterium tuberculosis]
1DQZ_A 2.28e-41 128 362 32 267
ChainA, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis],1DQZ_B Chain B, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis]
1DQY_A 2.47e-41 128 362 35 270
ChainA, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1D6 2.50e-255 1 640 1 651
Protein PS1 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=csp1 PE=1 SV=1
P0C1D7 5.04e-255 1 640 1 651
Protein PS1 OS=Corynebacterium melassecola OX=41643 GN=csp1 PE=4 SV=1
Q06947 4.95e-42 126 374 74 323
Diacylglycerol acyltransferase/mycolyltransferase Ag85B OS=Mycobacterium avium OX=1764 GN=fbpB PE=3 SV=1
Q49575 9.40e-42 126 374 74 323
Diacylglycerol acyltransferase/mycolyltransferase Ag85B OS=Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600) OX=487521 GN=fbpB PE=3 SV=2
Q05861 1.78e-41 126 374 76 325
Diacylglycerol acyltransferase/mycolyltransferase Ag85A OS=Mycobacterium leprae (strain TN) OX=272631 GN=fbpA PE=3 SV=3

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.031273 0.904036 0.015934 0.044080 0.004263 0.000384

TMHMM  Annotations      download full data without filtering help

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