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CAZyme Information: MGYG000001534_01203
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Xanthomonas_B massiliensis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas_B; Xanthomonas_B massiliensis | |||||||||||
| CAZyme ID | MGYG000001534_01203 | |||||||||||
| CAZy Family | GT19 | |||||||||||
| CAZyme Description | Lipid-A-disaccharide synthase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 644298; End: 645569 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT19 | 42 | 400 | 7.4e-133 | 0.9887005649717514 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00025 | lpxB | 2.64e-175 | 37 | 420 | 1 | 380 | lipid-A-disaccharide synthase; Reviewed |
| COG0763 | LpxB | 4.32e-157 | 37 | 406 | 1 | 369 | Lipid A disaccharide synthetase [Cell wall/membrane/envelope biogenesis]. |
| pfam02684 | LpxB | 1.29e-116 | 42 | 414 | 3 | 369 | Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyze the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <=> UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyze the fist disaccharide step in the synthesis of lipid-A-disaccharide. |
| TIGR00215 | lpxB | 2.87e-109 | 38 | 400 | 6 | 366 | lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides] |
| PRK01021 | lpxB | 3.30e-41 | 38 | 375 | 227 | 566 | lipid-A-disaccharide synthase; Reviewed |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AKC87416.1 | 1.00e-207 | 38 | 416 | 21 | 399 |
| AUZ56554.1 | 2.04e-204 | 38 | 420 | 5 | 387 |
| AMJ55776.1 | 4.15e-204 | 38 | 417 | 17 | 396 |
| ADV26640.1 | 1.38e-202 | 38 | 421 | 17 | 400 |
| ALJ28855.1 | 1.74e-200 | 38 | 415 | 33 | 410 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 5W8N_A | 1.69e-112 | 40 | 414 | 9 | 380 | LipidA Disaccharide Synthase (LpxB)-6 solubilizing mutations [Escherichia coli BL21(DE3)] |
| 5W8S_A | 1.69e-112 | 40 | 414 | 9 | 380 | LipidA Disaccharide Synthase (LpxB)-7 solubilizing mutations [Escherichia coli BL21(DE3)],5W8X_A Lipid A Disaccharide Synthase (LpxB)-7 solubilizing mutations-Bound to UDP [Escherichia coli BL21(DE3)] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q4USP7 | 9.37e-193 | 37 | 415 | 43 | 421 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. campestris (strain 8004) OX=314565 GN=lpxB PE=3 SV=2 |
| Q8PAW6 | 9.37e-193 | 37 | 415 | 43 | 421 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) OX=190485 GN=lpxB PE=3 SV=2 |
| Q8PML8 | 2.77e-192 | 37 | 415 | 44 | 422 | Lipid-A-disaccharide synthase OS=Xanthomonas axonopodis pv. citri (strain 306) OX=190486 GN=lpxB PE=3 SV=2 |
| Q3BVL7 | 6.46e-191 | 38 | 415 | 45 | 422 | Lipid-A-disaccharide synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) OX=316273 GN=lpxB PE=3 SV=1 |
| Q2P4B8 | 4.49e-187 | 38 | 415 | 45 | 422 | Lipid-A-disaccharide synthase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) OX=342109 GN=lpxB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.958890 | 0.040803 | 0.000096 | 0.000095 | 0.000043 | 0.000096 |