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CAZyme Information: MGYG000001537_01989

You are here: Home > Sequence: MGYG000001537_01989

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cellulomonas timonensis
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Cellulomonadaceae; Cellulomonas; Cellulomonas timonensis
CAZyme ID MGYG000001537_01989
CAZy Family GH10
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
821 MGYG000001537_12|CGC9 88380.74 7.4225
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001537 4057828 Isolate not provided not provided
Gene Location Start: 312595;  End: 315060  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.55

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH62 504 788 1.1e-116 0.9928057553956835
GH10 42 331 1.1e-108 0.9801980198019802
CBM2 368 468 1.7e-36 0.9900990099009901

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd08987 GH62 2.37e-173 505 816 1 304
Glycosyl hydrolase family 62, characterized arabinofuranosidases. The glycosyl hydrolase family 62 (GH62) includes eukaryotic (mostly fungal) and prokaryotic enzymes which are characterized arabinofuranosidases (alpha-L-arabinofuranosidases; EC 3.2.1.55) that specifically cleave either alpha-1,2 or alpha-1,3-L-arabinofuranose side chains from xylans. These enzymes show significantly different substrate preference with rather low specific activity towards natural substrates and differ in catalytic efficiency. They do not act on xylose moieties in xylan that are adorned with an arabinose side chain at both O2 and O3 positions, nor do they display any non-specific arabinofuranosidase activity. The synergistic action in biomass degradation makes GH62 promising candidates for biotechnological improvements of biofuel production and in various biorefinery applications. These enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan.
pfam00331 Glyco_hydro_10 3.25e-138 39 331 1 310
Glycosyl hydrolase family 10.
smart00633 Glyco_10 1.42e-114 81 328 1 262
Glycosyl hydrolase family 10.
COG3693 XynA 3.14e-77 38 326 23 334
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
pfam03664 Glyco_hydro_62 6.89e-60 505 788 3 272
Glycosyl hydrolase family 62. Family of alpha -L-arabinofuranosidase (EC 3.2.1.55). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QVI64496.1 0.0 1 821 1 814
QCB92556.1 0.0 4 821 4 833
QHT57555.1 1.20e-309 1 815 1 806
ADG75907.1 7.40e-306 1 815 1 826
QVI61811.1 7.92e-306 1 815 1 818

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5M0K_A 9.35e-179 1 335 2 337
CRYSTALSTRUCTURE of endo-1,4-beta-xylanase from Cellulomonas flavigena [Cellulomonas flavigena],5M0K_B CRYSTAL STRUCTURE of endo-1,4-beta-xylanase from Cellulomonas flavigena [Cellulomonas flavigena]
5B6S_A 1.48e-159 505 821 1 316
ChainA, Glycosyl hydrolase family 62 protein [Coprinopsis cinerea okayama7#130],5B6S_B Chain B, Glycosyl hydrolase family 62 protein [Coprinopsis cinerea okayama7#130],5B6T_A Chain A, Glycosyl hydrolase family 62 protein [Coprinopsis cinerea okayama7#130],5B6T_B Chain B, Glycosyl hydrolase family 62 protein [Coprinopsis cinerea okayama7#130]
1ISV_A 8.00e-141 37 337 3 304
Crystalstructure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylose [Streptomyces olivaceoviridis],1ISV_B Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylose [Streptomyces olivaceoviridis],1ISW_A Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylobiose [Streptomyces olivaceoviridis],1ISW_B Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylobiose [Streptomyces olivaceoviridis],1ISX_A Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylotriose [Streptomyces olivaceoviridis],1ISX_B Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylotriose [Streptomyces olivaceoviridis],1ISY_A Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with glucose [Streptomyces olivaceoviridis],1ISY_B Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with glucose [Streptomyces olivaceoviridis],1ISZ_A Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with galactose [Streptomyces olivaceoviridis],1ISZ_B Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with galactose [Streptomyces olivaceoviridis],1IT0_A Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with lactose [Streptomyces olivaceoviridis],1IT0_B Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with lactose [Streptomyces olivaceoviridis],1V6U_A Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 2(2)-alpha-L-arabinofuranosyl-xylobiose [Streptomyces olivaceoviridis],1V6U_B Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 2(2)-alpha-L-arabinofuranosyl-xylobiose [Streptomyces olivaceoviridis],1V6V_A Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(2)-alpha-L-arabinofuranosyl-xylotriose [Streptomyces olivaceoviridis],1V6V_B Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(2)-alpha-L-arabinofuranosyl-xylotriose [Streptomyces olivaceoviridis],1V6W_A Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 2(2)-4-O-methyl-alpha-D-glucuronosyl-xylobiose [Streptomyces olivaceoviridis],1V6W_B Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 2(2)-4-O-methyl-alpha-D-glucuronosyl-xylobiose [Streptomyces olivaceoviridis],1V6X_A Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(3)-4-O-methyl-alpha-D-glucuronosyl-xylotriose [Streptomyces olivaceoviridis],1V6X_B Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(3)-4-O-methyl-alpha-D-glucuronosyl-xylotriose [Streptomyces olivaceoviridis],1XYF_A Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis [Streptomyces olivaceoviridis],1XYF_B Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis [Streptomyces olivaceoviridis]
1E0W_A 1.01e-140 37 334 3 301
Xylanase10A from Sreptomyces lividans. native structure at 1.2 angstrom resolution [Streptomyces lividans],1E0X_A Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme Intermediate At 1.65 A [Streptomyces lividans],1E0X_B Xylanase 10a From Sreptomyces Lividans. Xylobiosyl-Enzyme Intermediate At 1.65 A [Streptomyces lividans],1OD8_A Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-isofagomine lactam [Streptomyces lividans],1V0K_A Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-deoxynojirimycin at pH 5.8 [Streptomyces lividans],1V0L_A Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-isofagomine at pH 5.8 [Streptomyces lividans],1V0M_A Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-deoxynojirimycin at pH 7.5 [Streptomyces lividans],1V0N_A Xylanase Xyn10a from Streptomyces lividans in complex with xylobio-isofagomine at pH 7.5 [Streptomyces lividans]
2G3I_A 1.01e-140 37 334 3 301
Structureof S.olivaceoviridis xylanase Q88A/R275A mutant [Streptomyces olivaceoviridis],2G3J_A Structure of S.olivaceoviridis xylanase Q88A/R275A mutant [Streptomyces olivaceoviridis],2G4F_A Chain A, Hydrolase [Streptomyces olivaceoviridis],2G4F_B Chain B, Hydrolase [Streptomyces olivaceoviridis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P07986 2.29e-145 6 468 13 481
Exoglucanase/xylanase OS=Cellulomonas fimi OX=1708 GN=cex PE=1 SV=1
P26514 2.42e-139 32 334 39 342
Endo-1,4-beta-xylanase A OS=Streptomyces lividans OX=1916 GN=xlnA PE=1 SV=2
B4XVN1 4.38e-109 5 449 6 442
Endo-1,4-beta-xylanase A OS=Streptomyces sp. OX=1931 GN=xynAS9 PE=1 SV=1
P23031 3.64e-80 505 814 323 615
Alpha-L-arabinofuranosidase C OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=xynC PE=1 SV=2
Q0H904 1.35e-76 48 333 40 325
Endo-1,4-beta-xylanase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=xlnC PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000819 0.991098 0.000327 0.007136 0.000338 0.000258

TMHMM  Annotations      download full data without filtering help

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