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CAZyme Information: MGYG000001537_02665

You are here: Home > Sequence: MGYG000001537_02665

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cellulomonas timonensis
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Cellulomonadaceae; Cellulomonas; Cellulomonas timonensis
CAZyme ID MGYG000001537_02665
CAZy Family PL1
CAZyme Description Pectate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
481 MGYG000001537_12|CGC15 50563.05 6.1054
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001537 4057828 Isolate not provided not provided
Gene Location Start: 1003350;  End: 1004795  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001537_02665.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 178 385 5.3e-90 0.9812206572769953

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 1.26e-57 63 466 35 345
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 4.12e-51 187 385 13 185
Amb_all domain.
pfam00544 Pec_lyase_C 1.34e-38 188 385 32 210
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QJW36767.1 3.16e-171 48 465 38 451
QGQ18988.1 3.46e-171 15 477 23 502
ARU53175.1 1.21e-169 48 465 43 456
QCB93221.1 9.85e-165 47 477 56 511
QVI64659.1 2.51e-162 53 472 31 465

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1VBL_A 3.53e-105 52 465 1 415
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1BN8_A 6.35e-104 48 465 18 419
BacillusSubtilis Pectate Lyase [Bacillus subtilis]
5AMV_A 1.31e-103 53 465 2 398
Structuralinsights into the loss of catalytic competence in pectate lyase at low pH [Bacillus subtilis],5X2I_A Polygalacturonate Lyase by Fusing with a Self-assembling Amphipathic Peptide [Bacillus subtilis subsp. subtilis str. 168]
2BSP_A 1.79e-103 48 465 18 419
ChainA, PROTEIN (PECTATE LYASE) [Bacillus subtilis]
2NZM_A 1.04e-102 53 465 2 398
ChainA, Pectate lyase [Bacillus subtilis],2O04_A Chain A, Pectate lyase [Bacillus subtilis],2O0V_A Chain A, Pectate lyase [Bacillus subtilis],2O0W_A Chain A, Pectate lyase [Bacillus subtilis],2O17_A Chain A, Pectate lyase [Bacillus subtilis],2O1D_A Chain A, Pectate lyase [Bacillus subtilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P39116 3.48e-103 48 465 18 419
Pectate lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pel PE=1 SV=1
Q60140 5.01e-57 64 466 39 380
Pectate lyase OS=Pseudomonas viridiflava OX=33069 GN=pel PE=3 SV=1
Q59671 2.70e-56 64 465 40 380
Pectate lyase OS=Pseudomonas fluorescens OX=294 GN=pel PE=3 SV=1
P72242 7.58e-55 64 465 39 379
Pectate lyase OS=Pseudomonas amygdali pv. lachrymans OX=53707 GN=pelP PE=3 SV=1
Q56806 2.76e-54 64 465 36 377
Pectate lyase OS=Xanthomonas campestris pv. malvacearum OX=86040 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000337 0.998911 0.000179 0.000228 0.000167 0.000143

TMHMM  Annotations      download full data without filtering help

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