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CAZyme Information: MGYG000001540_01393

You are here: Home > Sequence: MGYG000001540_01393

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Corynebacterium provencense
Lineage Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium provencense
CAZyme ID MGYG000001540_01393
CAZy Family CE1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
645 MGYG000001540_2|CGC1 70262.19 4.7248
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001540 3078120 Isolate not provided not provided
Gene Location Start: 75667;  End: 77604  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001540_01393.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE1 106 374 5.4e-53 0.9691629955947136

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0627 FrmB 2.49e-59 70 380 11 316
S-formylglutathione hydrolase FrmB [Defense mechanisms].
COG5479 Psp3 3.45e-40 399 641 100 365
Uncharacterized conserved protein, contains LGFP repeats [Function unknown].
pfam00756 Esterase 4.38e-35 101 372 1 246
Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.
pfam08310 LGFP 1.75e-18 458 509 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].
pfam08310 LGFP 1.46e-13 565 615 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AWT27250.1 0.0 1 645 1 645
AGP29855.1 0.0 7 642 7 642
AEK35593.1 0.0 1 641 1 647
AHW65452.1 1.02e-290 56 642 57 647
CAI36286.1 1.01e-285 7 642 12 648

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SX4_AAA 1.26e-219 53 642 22 605
ChainAAA, Protein PS1 [Corynebacterium glutamicum],6SX4_BBB Chain BBB, Protein PS1 [Corynebacterium glutamicum],6SX4_CCC Chain CCC, Protein PS1 [Corynebacterium glutamicum],6SX4_DDD Chain DDD, Protein PS1 [Corynebacterium glutamicum]
6SWZ_AAA 2.03e-82 403 642 6 243
ChainAAA, Protein PS1 [Corynebacterium glutamicum]
4MQL_A 1.01e-44 97 365 13 271
ChainA, Diacylglycerol acyltransferase/mycolyltransferase Ag85C [Mycobacterium tuberculosis]
7MYG_A 1.85e-44 97 365 7 265
ChainA, Diacylglycerol acyltransferase [Mycobacterium tuberculosis],7MYG_B Chain B, Diacylglycerol acyltransferase [Mycobacterium tuberculosis]
1DQZ_A 1.95e-44 97 365 9 267
ChainA, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis],1DQZ_B Chain B, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1D6 1.65e-226 8 642 10 648
Protein PS1 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=csp1 PE=1 SV=1
P0C1D7 4.69e-226 8 642 10 648
Protein PS1 OS=Corynebacterium melassecola OX=41643 GN=csp1 PE=4 SV=1
O52956 8.52e-44 97 392 54 341
Diacylglycerol acyltransferase/mycolyltransferase Ag85A OS=Mycobacterium avium OX=1764 GN=fbpA PE=3 SV=1
O06052 6.66e-43 97 381 54 329
Diacylglycerol acyltransferase/mycolyltransferase Ag85A OS=Mycobacterium gordonae OX=1778 GN=fbpA PE=3 SV=1
P0A4V5 6.82e-43 97 365 57 315
Diacylglycerol acyltransferase/mycolyltransferase Ag85C OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=fbpC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000347 0.998843 0.000222 0.000231 0.000183 0.000145

TMHMM  Annotations      download full data without filtering help

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19 41