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CAZyme Information: MGYG000001542_03247

You are here: Home > Sequence: MGYG000001542_03247

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus_A sp900069005
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus_A; Paenibacillus_A sp900069005
CAZyme ID MGYG000001542_03247
CAZy Family PL12
CAZyme Description Heparin-sulfate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
724 MGYG000001542_37|CGC2 82694.87 5.0802
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001542 5846629 Isolate not provided not provided
Gene Location Start: 217948;  End: 220122  Strand: +

Full Sequence      Download help

MNVNGTEASH  QDKVYSVFSL  LQLEKPELAD  VAAAVKQDHY  EEALQALHRY  YLERHLPGNR60
RSCEETAQIT  DYVKENWADE  VAMVMKTADE  VVNQTFLFQF  PWDMERTQVP  VTFDGAMDWN120
CIPDVDPEWA  YMLNRHRYWI  ALGQAYAMTG  EDKYAAALCR  QLEDWIDRNP  VPSEPTRDTL180
NWRTIEAGLR  GSNWIKTLRY  VWDSPLFTPV  LLAKVLISLS  EHARYLAEAF  TGWKRISNWG240
VLETNGLFPI  ALTFPELKGS  EQWRSLAEER  LGETARIQVM  ADGIHWEQSP  TYHHEVMCCY300
LDCLYLAEQH  GIKLDEDFRG  KVHEMAMASL  YWANPGHRQP  MFGDSDDNDV  RSLLTYAAAL360
FKDGTLRFGA  DQQMDYDSAW  LLGMEAIRNY  ESLSSVEPAE  RSHAFIHSGH  YVMRSGWSEQ420
DLYMYFHCGP  QGGGHGHADM  LHIDLHAYGK  EFLTDLGRYN  YSDHTPVRQA  LKESAAHNTT480
TVDDSGFTEI  ADTWMFDRIA  SPLGSKWISR  PDYDYVEGSH  DGYLRLDDPV  LVNRRIIFIK540
PHYWLLVDRF  QSKGEHQYKQ  HFHFGSGAIG  LEENSRICRT  QNDGEANLLI  IPIQSEGLHA600
EVSESVISRE  YNLLESSPQL  TYSRSGSGLT  TMMQLLYPLR  PGELAAPQVN  KIPVFRHTGE660
QVEDAQAEAC  RIVHPELGTE  HILVISHKVP  TGHYDSYVVD  GVQIFGEIVL  IAGSTDKRQI720
TVIN724

Enzyme Prediction      help

No EC number prediction in MGYG000001542_03247.

CAZyme Signature Domains help

Created with Snap3672108144181217253289325362398434470506543579615651687408549PL12
Family Start End Evalue family coverage
PL12 408 549 4.5e-42 0.9927536231884058

CDD Domains      download full data without filtering help

Created with Snap367210814418121725328932536239843447050654357961565168718363Hepar_II_III_N398631Hepar_II_III
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam16889 Hepar_II_III_N 1.23e-55 18 363 1 338
Heparinase II/III N-terminus. This is the N-terminal domain of heparinase II/III proteins. It is a toroid-like domain.
pfam07940 Hepar_II_III 3.60e-30 398 631 2 230
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.

CAZyme Hits      help

Created with Snap36721081441812172532893253623984344705065435796156516871724AZS15931.1|PL121723SMF90844.1|PL121724AIQ22723.1|PL1215724AIQ73161.1|PL129724AIQ34533.1|PL12
Hit ID E-Value Query Start Query End Hit Start Hit End
AZS15931.1 0.0 1 724 1 724
SMF90844.1 0.0 1 723 1 719
AIQ22723.1 0.0 1 724 1 720
AIQ73161.1 0.0 15 724 11 720
AIQ34533.1 0.0 9 724 5 719

PDB Hits      download full data without filtering help

Created with Snap3672108144181217253289325362398434470506543579615651687186384MMH_A186384MMI_A116635JMD_A116395JMF_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
4MMH_A 1.74e-46 18 638 10 595
Crystalstructure of heparan sulfate lyase HepC from Pedobacter heparinus [Pedobacter heparinus]
4MMI_A 1.74e-46 18 638 10 595
Crystalstructure of heparan sulfate lyase HepC mutant from Pedobacter heparinus [Pedobacter heparinus]
5JMD_A 5.08e-36 11 663 12 641
HeparinaseIII-BT4657 gene product, Methylated Lysines [Bacteroides thetaiotaomicron VPI-5482]
5JMF_A 4.03e-34 11 639 12 615
HeparinaseIII-BT4657 gene product [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      download full data without filtering help

Created with Snap367210814418121725328932536239843447050654357961565168718638sp|Q59289|HEPC_PEDHD7663sp|C7EXL6|HEPC_BACSE
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q59289 1.15e-45 18 638 34 619
Heparin-sulfate lyase OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) OX=485917 GN=hepC PE=1 SV=1
C7EXL6 1.67e-35 7 663 19 652
Heparin-sulfate lyase OS=Bacteroides stercoris OX=46506 GN=hepC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000068 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001542_03247.