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CAZyme Information: MGYG000001543_00244

You are here: Home > Sequence: MGYG000001543_00244

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnoclostridium sp900078195
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; Lachnoclostridium sp900078195
CAZyme ID MGYG000001543_00244
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
521 MGYG000001543_4|CGC5 58463.64 5.7328
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001543 4599950 Isolate not provided not provided
Gene Location Start: 288116;  End: 289681  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001543_00244.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 105 466 1.5e-81 0.9353846153846154

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 7.32e-96 1 450 1 467
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 2.85e-32 184 461 48 305
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02218 PLN02218 6.25e-28 81 459 67 408
polygalacturonase ADPG
PLN03003 PLN03003 3.68e-26 82 395 24 301
Probable polygalacturonase At3g15720
PLN03010 PLN03010 7.11e-26 83 395 48 320
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ96409.1 7.60e-243 1 516 1 515
ACR72585.1 1.55e-223 1 518 1 518
BCJ92569.1 1.55e-222 1 499 1 498
ABX43097.1 1.46e-221 1 515 1 515
QHQ62181.1 2.00e-213 1 518 1 517

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 1.84e-39 82 377 28 343
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]
5OLP_A 1.16e-33 84 459 47 425
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
1BHE_A 2.05e-32 95 460 23 362
ChainA, POLYGALACTURONASE [Pectobacterium carotovorum]
2UVE_A 4.08e-24 47 433 116 536
Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]
1HG8_A 1.56e-06 187 387 66 269
Endopolygalacturonasefrom the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P27644 8.08e-47 214 446 13 247
Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1
A7PZL3 2.00e-43 86 467 67 432
Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P26509 1.74e-31 95 460 49 388
Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1
P18192 2.91e-30 95 460 49 388
Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1
Q8RY29 2.80e-25 81 434 67 392
Polygalacturonase ADPG2 OS=Arabidopsis thaliana OX=3702 GN=ADPG2 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000045 0.000001 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001543_00244.