CAZyme Information: MGYG000001543_03373

Basic Information

• Species: Lachnoclostridium sp900078195
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; Lachnoclostridium sp900078195
• CAZyme ID: MGYG000001543_03373
• CAZy Family: GH73
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
335	MGYG000001543_7|CGC28	36460.06	8.6908

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001543	4599950	Isolate	not provided	not provided

• Gene Location: Start: 2009140; End: 2010147 Strand: +

Full Sequence      

MKLVESILTKNPCYKAGKKITVKGLMLHSVGCPQPNATVFIKNWNSESYDRACVHGFIDG
NDGTVYQTLPWNHRGWHGGGSSNNTHIGVEMCEPACIKYTGGATFTCSDTATAKAVAKRT
YEAAVDLFAFLCKEYNLDPTADGVIISHAEGYKRGIASNHGDPEHLWKQLNTGYTMDGFR
QAVKVAMGIETAQPESDTVSYPEKLTSGYYRVRKTWKDSKSQLGAYRVLANAKAKADENT
GYSVFDNDGNVVYAPSAAKAETKTETASFEPYRVRIGIANLNIRKGPGTNYNKTGQFTGV
GVFTIIAESDGEGATKWGKLKSGAGWISLDYAKII

Enzyme Prediction     

No EC number prediction in MGYG000001543_03373.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd06583	PGRP	3.87e-22	22	163	2	123	Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.
pfam01510	Amidase_2	1.95e-17	21	163	1	119	N-acetylmuramoyl-L-alanine amidase. This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.
smart00644	Ami_2	1.81e-15	21	148	2	117	Ami_2 domain.
COG5632	CwlA	3.64e-06	2	259	7	257	N-acetylmuramoyl-L-alanine amidase CwlA [Cell wall/membrane/envelope biogenesis].
pfam08239	SH3_3	0.002	279	331	1	52	Bacterial SH3 domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AFC63685.1	3.81e-148	1	335	1	498
ADL53623.1	7.54e-143	1	333	1	486
QBF75599.1	6.24e-116	1	332	174	496
AMP42248.1	2.16e-111	1	329	1	450
QQQ98955.1	6.55e-111	1	187	1	191

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000051	0.000003	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001543_03373.