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CAZyme Information: MGYG000001557_00452

You are here: Home > Sequence: MGYG000001557_00452

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species F0040 sp900095835
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; F0040; F0040 sp900095835
CAZyme ID MGYG000001557_00452
CAZy Family GH13
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
667 74489.95 5.8644
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001557 2753132 Isolate not provided not provided
Gene Location Start: 485363;  End: 487366  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001557_00452.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH13 59 346 7e-51 0.9688581314878892

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd11314 AmyAc_arch_bac_plant_AmyA 6.31e-122 30 374 1 301
Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes AmyA from bacteria, archaea, water fleas, and plants. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.
PLN02361 PLN02361 2.17e-51 30 423 13 396
alpha-amylase
PRK09441 PRK09441 3.26e-46 29 365 4 392
cytoplasmic alpha-amylase; Reviewed
PLN02784 PLN02784 9.37e-41 30 423 504 888
alpha-amylase
PLN00196 PLN00196 9.63e-39 30 391 26 393
alpha-amylase; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCS84551.1 3.61e-238 3 664 2 654
QNT66936.1 3.36e-206 7 659 8 664
ACH26134.1 8.80e-196 7 650 8 651
QUB90758.1 6.44e-190 3 660 2 664
QUB70315.1 1.29e-189 3 660 2 664

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3BSH_A 1.07e-36 30 435 3 411
ChainA, Alpha-amylase type A isozyme [Hordeum vulgare]
2QPS_A 1.69e-36 30 423 3 399
ChainA, Alpha-amylase type A isozyme [Hordeum vulgare]
3BSG_A 3.69e-36 30 435 3 411
ChainA, Alpha-amylase type A isozyme [Hordeum vulgare]
2QPU_A 4.26e-36 30 391 3 370
ChainA, Alpha-amylase type A isozyme [Hordeum vulgare],2QPU_B Chain B, Alpha-amylase type A isozyme [Hordeum vulgare],2QPU_C Chain C, Alpha-amylase type A isozyme [Hordeum vulgare]
1HT6_A 4.26e-36 30 391 3 370
CrystalStructure At 1.5a Resolution Of The Barley Alpha- Amylase Isozyme 1 [Hordeum vulgare],1P6W_A Crystal structure of barley alpha-amylase isozyme 1 (AMY1) in complex with the substrate analogue, methyl 4I,4II,4III-tri-thiomaltotetraoside (thio-DP4) [Hordeum vulgare],1RPK_A Crystal structure of barley alpha-amylase isozyme 1 (amy1) in complex with acarbose [Hordeum vulgare]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8LFG1 2.59e-37 30 423 27 408
Probable alpha-amylase 2 OS=Arabidopsis thaliana OX=3702 GN=AMY2 PE=2 SV=1
P08117 3.53e-37 30 391 27 375
Alpha-amylase AMY3 OS=Triticum aestivum OX=4565 GN=AMY1.1 PE=2 SV=1
P00693 8.93e-36 4 391 11 394
Alpha-amylase type A isozyme OS=Hordeum vulgare OX=4513 GN=AMY1.1 PE=1 SV=1
Q94A41 2.56e-35 20 364 488 825
Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=AMY3 PE=1 SV=1
P27932 1.69e-33 30 389 30 392
Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica OX=39947 GN=AMY1.2 PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000330 0.998911 0.000216 0.000201 0.000168 0.000159

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001557_00452.