dbCAN-seq: a database of CAZyme sequence and annotation

You are browsing environment: HUMAN GUT

help

CAZyme Information: MGYG000001560_00639

You are here: Home > Sequence: MGYG000001560_00639

Basic Information help

Species

Massilioclostridium coli

Lineage

Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli

CAZyme ID

MGYG000001560_00639

CAZy Family

GH106

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1328		147180.96	4.0359

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001560	2985330	Isolate	not provided	not provided

Gene Location

Start: 777048; End: 781034 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000001560_00639.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH106	42	839	7.9e-63	0.8179611650485437

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17132	Glyco_hydro_106	7.11e-18	190	787	344	870	alpha-L-rhamnosidase.
pfam07554	FIVAR	2.06e-05	1208	1267	3	69	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
pfam07554	FIVAR	5.02e-04	1067	1129	3	68	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
COG1196	Smc	0.007	1072	1266	268	479	Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning].
pfam02837	Glyco_hydro_2_N	0.007	929	1007	63	131	Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. The domain binds the sugar moiety during the sugar-hydrolysis reaction.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGH71057.1	0.0	29	1070	73	1146
AHF25191.1	0.0	26	1057	46	1152
QGH70002.1	8.87e-137	34	1061	83	1119
QYN20448.1	1.52e-128	10	1015	22	1081
SDS67158.1	5.45e-127	41	1021	6	943

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
E8MGH9	8.05e-07	1094	1324	1694	1921	Beta-L-arabinobiosidase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=hypBA2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000478	0.998584	0.000215	0.000271	0.000222	0.000188

TMHMM Annotations download full data without filtering help

start	end
5	27
1305	1324