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CAZyme Information: MGYG000001560_00999

You are here: Home > Sequence: MGYG000001560_00999

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Massilioclostridium coli
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli
CAZyme ID MGYG000001560_00999
CAZy Family CBM67
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1736 MGYG000001560_1|CGC13 192767.6 4.1396
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001560 2985330 Isolate not provided not provided
Gene Location Start: 1199403;  End: 1204613  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001560_00999.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH78 265 736 7.7e-88 0.9880952380952381
CBM67 41 234 1.2e-40 0.9943181818181818
CBM32 976 1101 3.5e-18 0.7903225806451613

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam17389 Bac_rhamnosid6H 2.33e-30 355 673 1 340
Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam00754 F5_F8_type_C 1.10e-15 968 1100 1 120
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
cd00057 FA58C 8.61e-12 971 1118 14 142
Substituted updates: Jan 31, 2002
pfam08531 Bac_rhamnosid_N 2.30e-11 67 226 3 153
Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
pfam00754 F5_F8_type_C 8.87e-11 1224 1355 6 120
F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QJT00118.1 1.16e-238 17 1370 25 1119
QEV28934.1 1.62e-238 39 1370 40 1119
AXE90460.1 1.24e-237 39 1370 40 1119
AVV47733.1 1.58e-232 39 1370 15 1094
AZP23721.1 4.21e-232 39 1370 14 1093

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3CIH_A 9.07e-22 163 711 124 674
Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P9WF03 5.78e-20 38 739 145 879
Alpha-L-rhamnosidase OS=Alteromonas sp. (strain LOR) OX=1537994 GN=LOR_34 PE=1 SV=1
T2KPL4 1.03e-19 57 731 187 903
Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22170 PE=2 SV=1
T2KM26 1.34e-10 355 709 728 1108
Bifunctional sulfatase/alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22250 PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001319 0.937931 0.059603 0.000415 0.000371 0.000323

TMHMM  Annotations      download full data without filtering help

start end
7 26
1713 1732