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CAZyme Information: MGYG000001560_01312
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Massilioclostridium coli | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli | |||||||||||
| CAZyme ID | MGYG000001560_01312 | |||||||||||
| CAZy Family | CBM67 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 1557361; End: 1563180 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH78 | 292 | 739 | 1.2e-84 | 0.9047619047619048 |
| CBM67 | 40 | 230 | 8.9e-42 | 0.9943181818181818 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam17389 | Bac_rhamnosid6H | 2.36e-34 | 351 | 676 | 1 | 340 | Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria. |
| pfam00754 | F5_F8_type_C | 3.16e-12 | 978 | 1111 | 1 | 120 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| pfam08531 | Bac_rhamnosid_N | 8.25e-11 | 70 | 221 | 4 | 152 | Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition. |
| pfam00754 | F5_F8_type_C | 5.69e-08 | 1238 | 1360 | 9 | 114 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| pfam18998 | Flg_new_2 | 8.75e-08 | 804 | 880 | 1 | 73 | Divergent InlB B-repeat domain. This family of domains are found in bacterial cell surface proteins. They are often found in tandem array. This domain is closely related to pfam09479. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QJT00118.1 | 2.26e-218 | 37 | 1126 | 39 | 1117 |
| AYC36171.1 | 4.41e-218 | 37 | 1126 | 39 | 1117 |
| AVV47733.1 | 3.16e-216 | 37 | 1126 | 14 | 1092 |
| QEV28934.1 | 3.37e-216 | 15 | 1126 | 15 | 1117 |
| AXE90460.1 | 4.71e-216 | 37 | 1126 | 39 | 1117 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6I60_A | 9.03e-32 | 57 | 790 | 179 | 937 | Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12] |
| 3CIH_A | 1.47e-19 | 302 | 714 | 251 | 674 | Crystalstructure of a putative alpha-rhamnosidase from Bacteroides thetaiotaomicron [Bacteroides thetaiotaomicron VPI-5482] |
| 2OKX_A | 1.48e-17 | 38 | 246 | 6 | 203 | Crystalstructure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1],2OKX_B Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A [Bacillus sp. GL1] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| T2KM26 | 4.60e-14 | 351 | 712 | 728 | 1108 | Bifunctional sulfatase/alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22250 PE=1 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.002758 | 0.739109 | 0.256699 | 0.000581 | 0.000452 | 0.000368 |
