dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000001560_01320

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Basic Information help

Species

Massilioclostridium coli

Lineage

Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli

CAZyme ID

MGYG000001560_01320

CAZy Family

GH106

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1298	MGYG000001560_1\|CGC18	143610.29	4.0732

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001560	2985330	Isolate	not provided	not provided

Gene Location

Start: 1570506; End: 1574402 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000001560_01320.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH106	45	1006	5.5e-79	0.9575242718446602

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17132	Glyco_hydro_106	7.93e-10	206	645	351	755	alpha-L-rhamnosidase.
pfam02837	Glyco_hydro_2_N	1.56e-05	919	1011	61	153	Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. The domain binds the sugar moiety during the sugar-hydrolysis reaction.
pfam07554	FIVAR	3.93e-05	1177	1236	3	69	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
PRK10340	ebgA	3.24e-04	925	1009	111	195	cryptic beta-D-galactosidase subunit alpha; Reviewed
pfam07554	FIVAR	0.005	1038	1100	3	68	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGH70002.1	9.03e-231	19	1030	67	1113
QYN20448.1	1.83e-206	15	1036	21	1124
QNP57182.1	1.32e-187	49	1004	12	938
SDG73971.1	2.45e-187	41	1030	3	960
QHC72677.1	2.89e-185	39	1004	2	938

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6Q2F_A	4.38e-06	206	1006	410	1109	Structureof Rhamnosidase from Novosphingobium sp. PP1Y [Novosphingobium sp. PP1Y]

Swiss-Prot Hits help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000492	0.502286	0.496363	0.000328	0.000285	0.000224

TMHMM Annotations download full data without filtering help

start	end
9	31
1275	1294