CAZyme Information: MGYG000001560_01601

Basic Information

• Species: Massilioclostridium coli
• Lineage: Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli
• CAZyme ID: MGYG000001560_01601
• CAZy Family: CBM67
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1960	MGYG000001560_2|CGC2	214412.25	4.1627

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001560	2985330	Isolate	not provided	not provided

• Gene Location: Start: 169426; End: 175308 Strand: -

Full Sequence      

MKKRQRILSLVLTLAMASSMVVPSNVFAKDAEEHVSNWDAQWIWDSEMPTTLPEAGDVWM
NFRKEVTLDKVPDSVIAKIAVESRYWLYINGEMVVFEGGLKRGPNREDSYYDKVDITKYL
HEGENTIAVAVWYLGKGNQSFSSNPAGVGGFLFEADFGDQQVLSDDTWKVKRDPAYLHSK
DHESAAEQPNYRLPESNIYYDAQLELGDWQDPSYNDDNWANAVERGQAPCAPWNELYERP
IPLLKDYGLKDYNNSAQYVGYTTTEETTLDMVLDYNAQLTPYLEIDAPAGLKIDMRTDNY
SDPAGNGNTTKSAYITKDGEQSFEALGWFNGQHVYYTIPAGVTIKALKFRETGYDTEFTG
SFTSDDDFMNTLWEKSLRTLYVTMRDNYMDCPDRERCQWWGDVTSEMLMTFYALDEEAYK
LYEKGLQTKLGFIQNDVLYTTVPNSGYETELPMQELAGICGVWEYYLYTGRTEVLEQMYT
PIQNYLTKKWSLQGNGLVTHYGGTWDWMDWGSNADVAGIENAWYYKATNCLKQMAEVLGK
EEDIAEYQNTMARIEMGYKSLWTENGYKSAAQAKPDDRANALAVLAGLATPDQYPTILNV
LTTTYNSSPYMEKYVLDAMVDMGYMEEAQERIKFRYADMVEGDLAYSTLWEFWDKNAGTK
NHAWTGGPLITMSKDMAGVAPITPGYTTYQVKPDMGSLTHIETSVPAVIGDIKVTLDRDD
AAKTFHMNVTAPEGGQANIAIPRFAGENVAITANGKTVFANGAPVESVEGLTYVSNDSKY
VYFTATPGTWDFNETVVAAGEDAEYTLTVNGTEGGIVKVNGTEQALPYTATVANGTTVEL
EAVPNSDYNFDGWNGSVGSVDNTVSVVVNNNMDVTANFSLKPVSVYSVVKVEDPMGAGIS
IECDGVTYTTPANVVVKTGSAATIKVADEQNGSFDFSNWSGQLYSASKEVTFNVEQDMAV
TVNGIYKGVANIASNAKVTADNGLGGTWAAENLVDGNTKVGFSTNTYSDRDLSKTTAKEH
NITLDLNSPETFDTITLYPRADAKDKDGGSPNFPEEFYIQTSNDGKIFTDVKHVVMTENP
NGAPQKFALDEPVTAQYVRIKTLKLGTPAADEGIANAYRVQIMEIEIFNNSATGDYSVNI
SNAGDGAGKVLVNGKEATLPLTESYPVGTKLAVEAVPENGSQFAGWNGSFTTNNRVAYVE
VKKDLNLTANFKNLDITVDPDENLASGKTVTAENSEGNSAQWNPNFLTDGKTQSEGKNEP
NTGVKGYTSKVYPFSQYAGGDISANPHHITIDLGKNVTFSNVALYARSDTDAKPEGSGLC
ANFPQNFNINVKADGEKEFTTVKTVTGQTDIPQDNNKRSYDLDTAVTARYIQIETTLLGT
PSFDEGDQQSGGARVQLAEIEVYNLNDRMNFSNGKTVDVDNTDGGAGMWSPTYLTDGKTQ
SEGRNDAQNGIKGYTSTSYPNADISANPHHITIDLGEDRMIDQVALYARNDTDAIEEGSN
LCSNFPVDFNIKVKAEDEDEFTTVKTVTGQTNIPIDQNEKVYQLDNIVKARYVQIETTRL
GELSFDDKSNAPRMQLAEIIVSGKLSEQTPYEPGSIKVSADQTTDLTIGESYTINAEVQN
SSLADNSLVWSVEDEQGFASTVADLHLEDNLNPVLVAKEKGTAYVVARFANGTGEAVRLE
IAVEKDGEPEPPVEEADKHILNAVIKYAEEQKASDDFNNVIADVQESFNAALDAAKEIAA
DPAASQDAVDAAWKALMTEIHKLGFVKGDITSLEALVALAETYDMNDYVEAGQAEFQEAL
KAAQELLADKDNAMQAEIETAESNLLNAMLNLRYKADKSILEKVIAEANGKDANAYTAES
YAVLEAAVAEANAVMANENATQEEVDAAVTSVQEAMKGLVAVEKPSTETPDENKADGTQT
GQESTTTKANAAKTGDVAPIAGVMALALAGAAVVVLKKKR

Enzyme Prediction     

No EC number prediction in MGYG000001560_01601.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH78	270	739	1.3e-82	0.9801587301587301
CBM67	40	233	7.5e-40	0.9943181818181818
CBM32	977	1125	1.8e-17	0.9354838709677419

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17389	Bac_rhamnosid6H	4.37e-27	357	668	1	332	Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.
pfam00754	F5_F8_type_C	1.34e-15	977	1110	1	120	F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.
pfam08531	Bac_rhamnosid_N	4.84e-11	85	225	16	153	Alpha-L-rhamnosidase N-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. This domain is probably involved in substrate recognition.
cd00057	FA58C	9.02e-10	968	1100	4	126	Substituted updates: Jan 31, 2002
pfam17390	Bac_rhamnosid_C	8.09e-07	678	743	1	65	Bacterial alpha-L-rhamnosidase C-terminal domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QEV28934.1	7.93e-231	19	1127	24	1119
AXE90460.1	2.17e-230	37	1127	39	1119
QJT00118.1	5.92e-230	4	1127	6	1119
AYC36171.1	3.29e-228	37	1127	39	1119
AVV47733.1	2.56e-224	37	1127	14	1094

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6I60_A	6.79e-27	37	792	144	939	Structureof alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12],6I60_B Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
T2KNB2	1.36e-18	115	792	231	920	Alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22090 PE=1 SV=2
T2KM26	1.57e-12	343	775	711	1161	Bifunctional sulfatase/alpha-L-rhamnosidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22250 PE=1 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000292	0.998969	0.000178	0.000224	0.000175	0.000151

TMHMM  Annotations     

start	end
1937	1956