dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000001560_01956

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Basic Information help

Species

Massilioclostridium coli

Lineage

Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Massilioclostridium; Massilioclostridium coli

CAZyme ID

MGYG000001560_01956

CAZy Family

GH106

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1039		116220.3	4.0713

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001560	2985330	Isolate	not provided	not provided

Gene Location

Start: 594554; End: 597673 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000001560_01956.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH106	13	557	8.9e-50	0.6104368932038835

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam07554	FIVAR	1.62e-06	920	979	3	69	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
pfam02837	Glyco_hydro_2_N	8.15e-06	652	722	63	133	Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. The domain binds the sugar moiety during the sugar-hydrolysis reaction.
pfam07554	FIVAR	3.39e-05	779	841	3	68	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.
NF033741	NlpC_p60_RipA	5.55e-04	798	989	50	224	NlpC/P60 family peptidoglycan endopeptidase RipA.
PRK10340	ebgA	7.08e-04	656	722	111	177	cryptic beta-D-galactosidase subunit alpha; Reviewed

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGH70002.1	1.51e-145	5	767	355	1113
QYN20448.1	5.43e-136	12	765	346	1116
QNP57182.1	3.61e-115	1	762	252	972
QHO90364.1	1.48e-114	1	762	304	1042
SDG73971.1	1.76e-110	1	762	248	972

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
E8MGH9	3.00e-06	772	1035	1664	1921	Beta-L-arabinobiosidase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=hypBA2 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000037	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations download full data without filtering help

start	end
1016	1035