CAZyme Information: MGYG000001562_00458

Basic Information

• Species: Alistipes timonensis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes timonensis
• CAZyme ID: MGYG000001562_00458
• CAZy Family: PL35
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
641		71570.54	7.0422

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001562	3488594	Isolate	not provided	not provided

• Gene Location: Start: 323037; End: 324962 Strand: +

Full Sequence      

MTRFRIAGLLLFLIALFRPLDGAAQNPSGLAVSGPHPRLLLPRGGERRIEAKIASDDFLR
SIHEAILHQSGKYLKAPLLERTFEGSRMLAVSREALTRIYFLSYAWRMTGDDRYACRAER
EMLNVCAFPDWNSSHFLDVSEMTMALAIGYDWLYDSLAESTRRTVAEAMFRLGIAEGVPE
TTSAPENCKWLKKKNNWNPVCNASMAFAAIAAYELDPELARRIIARSIRLVREIGIPEYA
PDGNYPEGYTYWNYGTAYAVMLIDALEGVYGTSFGLADVPGFLRTPEYILQMSTQGLGCW
AYADCTAQDPQSMKNSYPMFWFASRTGNPSLLWAEKQKIDDMIRSGAKSRMYRVRYLPSV
MLWAAEKPFEGMTAPQQRLYVGQGTTPVAIMRNHFGGDDEIFAGLKGGSCGHNHSHMDIG
SFVMYRGTKQWAKDLGIQDYYSLEKYGIELGDRSQYSSRWKALRLSSRVHNMMTFADSLQ
RVDARAKIVASGDREGFVYAVTDLSKADAAAVAAHRRGVAIVGDSYVVVRDEVTNGDREM
PLRWAMLTPAEVRIVDDRTAELTLGDERLSMRVEGDGVQLGTWSTEPRHEYDEPNPGTVM
VGFTATLAPGARTAYTVRLIPADAAGKAGDPIPALEKWNTR

Enzyme Prediction     

No EC number prediction in MGYG000001562_00458.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL35	400	574	1.6e-49	0.9608938547486033

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam07940	Hepar_II_III	6.97e-07	403	587	28	202	Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.
pfam16332	DUF4962	7.93e-04	32	173	133	290	Domain of unknown function (DUF4962). This family consists of uncharacterized proteins around 870 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AXY73442.1	1.65e-172	6	639	7	627
AWO02230.1	5.95e-169	13	638	10	624
QJW90915.1	1.48e-167	23	638	23	626
QHV93651.1	4.74e-166	10	638	8	626
QMW02098.1	1.42e-164	36	641	35	626

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3A0O_A	1.80e-10	93	544	206	657	Crystalstructure of alginate lyase from Agrobacterium tumefaciens C58 [Agrobacterium fabrum str. C58],3A0O_B Crystal structure of alginate lyase from Agrobacterium tumefaciens C58 [Agrobacterium fabrum str. C58]
3AFL_A	2.82e-09	93	544	206	657	Crystalstructure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide [Agrobacterium fabrum str. C58]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000226	0.999203	0.000151	0.000138	0.000127	0.000118

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001562_00458.