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CAZyme Information: MGYG000001562_00478

You are here: Home > Sequence: MGYG000001562_00478

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Alistipes timonensis
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes timonensis
CAZyme ID MGYG000001562_00478
CAZy Family PL10
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
527 58486.66 5.4913
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001562 3488594 Isolate not provided not provided
Gene Location Start: 350042;  End: 351625  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL10 111 392 1.7e-111 0.9927272727272727

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
TIGR02474 pec_lyase 7.52e-25 111 307 1 196
pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase. [Energy metabolism, Biosynthesis and degradation of polysaccharides]
pfam09492 Pec_lyase 1.47e-22 111 307 1 194
Pectic acid lyase. Members of this family are isozymes of pectate lyase (EC:4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
pfam09492 Pec_lyase 7.95e-09 47 209 5 163
Pectic acid lyase. Members of this family are isozymes of pectate lyase (EC:4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AII65137.1 2.43e-161 22 522 31 535
QJR56764.1 2.43e-161 22 522 31 535
QJR58440.1 2.43e-161 22 522 31 535
AII67882.1 2.43e-161 22 522 31 535
AND19555.1 2.43e-161 22 522 31 535

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1R76_A 1.31e-17 95 307 77 304
ChainA, pectate lyase [Niveispirillum irakense]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000474 0.998603 0.000311 0.000220 0.000191 0.000166

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001562_00478.