dbCAN-seq: a database of CAZyme sequence and annotation

You are browsing environment: HUMAN GUT

help

CAZyme Information: MGYG000001562_01110

You are here: Home > Sequence: MGYG000001562_01110

Species

Alistipes timonensis

Lineage

Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; Alistipes timonensis

CAZyme ID

MGYG000001562_01110

CAZy Family

GH28

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
476	MGYG000001562_13\|CGC8	52269.61	8.1599

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001562	3488594	Isolate	not provided	not provided

Gene Location

Start: 231180; End: 232610 Strand: -

No EC number prediction in MGYG000001562_01110.

Family	Start	End	Evalue	family coverage
GH28	141	457	3.1e-56	0.9261538461538461

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG5434	Pgu1	2.04e-43	123	376	89	382	Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295	Glyco_hydro_28	2.01e-11	203	385	41	234	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
TIGR03808	RR_plus_rpt_1	4.56e-06	133	221	54	158	twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
pfam12708	Pectate_lyase_3	1.58e-05	116	196	2	86	Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
PLN03003	PLN03003	2.26e-05	182	357	93	290	Probable polygalacturonase At3g15720

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ADY51374.1	6.79e-117	23	457	41	474
ADY51373.1	2.62e-105	23	466	47	506
ADY51372.1	2.51e-89	23	467	34	496
QIF01889.1	3.08e-62	25	467	42	493
ADY51377.1	4.00e-54	23	463	41	495

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5OLP_A	2.19e-11	101	347	36	315	Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
2UVE_A	3.85e-07	108	253	149	310	Structureof Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVE_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase [Yersinia enterocolitica],2UVF_A Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica],2UVF_B Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase in Complex with Digalaturonic Acid [Yersinia enterocolitica]

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
A7PZL3	8.54e-17	112	369	59	338	Probable polygalacturonase OS=Vitis vinifera OX=29760 GN=GSVIVT00026920001 PE=1 SV=1
P27644	2.57e-10	215	369	4	162	Polygalacturonase OS=Rhizobium radiobacter OX=358 GN=pgl PE=2 SV=1

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000324	0.999021	0.000170	0.000165	0.000154	0.000145

There is no transmembrane helices in MGYG000001562_01110.