dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000001571_00090

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Species

Lacrimispora sp000526575

Lineage

Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lacrimispora; Lacrimispora sp000526575

CAZyme ID

MGYG000001571_00090

CAZy Family

PL1

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
544	MGYG000001571_1\|CGC3	59443.01	5.4825

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001571	4730558	MAG	United States	North America

Gene Location

Start: 86739; End: 88373 Strand: -

No EC number prediction in MGYG000001571_00090.

Family	Start	End	Evalue	family coverage
PL1	218	387	3.2e-48	0.8316831683168316

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3866	PelB	2.13e-62	112	391	32	279	Pectate lyase [Carbohydrate transport and metabolism].
smart00656	Amb_all	7.87e-35	224	385	17	186	Amb_all domain.
pfam00544	Pec_lyase_C	1.28e-22	188	385	1	211	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BCJ94010.1	1.85e-276	17	542	40	565
ACX62589.1	2.77e-263	17	542	34	559
QOT09127.1	4.22e-263	17	542	34	559
AYB46946.1	9.80e-262	17	542	34	559
ASR49574.1	8.25e-261	8	542	24	556

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3VMV_A	9.65e-25	188	385	47	246	Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1VBL_A	6.10e-24	220	385	129	330	Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
1AIR_A	8.43e-22	230	440	94	313	ChainA, PECTATE LYASE C [Dickeya chrysanthemi],1O88_A Chain A, Pectate Lyase C [Dickeya chrysanthemi],1O8D_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8E_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8F_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8G_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8H_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8I_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8J_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8K_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8L_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1O8M_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi],1PLU_A Chain A, Protein (pectate Lyase C) [Dickeya chrysanthemi],2PEC_A Chain A, PECTATE LYASE C [Dickeya chrysanthemi]
2EWE_A	2.07e-21	230	440	94	313	ChainA, Pectate lyase C [Dickeya chrysanthemi]
2QXZ_A	1.01e-19	212	394	66	255	ChainA, pectate lyase II [Xanthomonas campestris pv. campestris],2QXZ_B Chain B, pectate lyase II [Xanthomonas campestris pv. campestris]

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q8GCB2	1.07e-26	171	394	67	281	Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1
Q65DC2	1.07e-26	171	394	67	281	Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1
B1B6T1	1.07e-26	171	394	67	281	Pectate trisaccharide-lyase OS=Bacillus sp. OX=1409 GN=pel PE=1 SV=1
P0C1C2	1.83e-26	188	444	72	338	Pectate lyase 3 OS=Pectobacterium carotovorum OX=554 GN=pel3 PE=1 SV=1
P0C1C3	8.45e-26	230	444	115	338	Pectate lyase 3 OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pel3 PE=3 SV=1

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000039	0.000001	0.000000	0.000000	0.000000	0.000000

There is no transmembrane helices in MGYG000001571_00090.