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CAZyme Information: MGYG000001599_00563

You are here: Home > Sequence: MGYG000001599_00563

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola sp900544075
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp900544075
CAZyme ID MGYG000001599_00563
CAZy Family CBM50
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
599 MGYG000001599_3|CGC3 68704.21 8.2413
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001599 4213385 MAG China Asia
Gene Location Start: 140129;  End: 141928  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001599_00563.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01476 LysM 7.99e-10 89 132 1 43
LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
cd00118 LysM 8.16e-10 87 131 1 45
Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
PRK06347 PRK06347 1.73e-09 34 189 408 576
1,4-beta-N-acetylmuramoylhydrolase.
PRK06347 PRK06347 7.74e-09 33 228 332 544
1,4-beta-N-acetylmuramoylhydrolase.
smart00257 LysM 9.11e-09 88 131 1 44
Lysin motif.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QRO25583.1 1.31e-284 1 599 1 601
ALA74972.1 2.65e-253 1 599 1 602
QJR68229.1 3.76e-253 1 599 1 602
QJR60047.1 3.76e-253 1 599 1 602
AII69224.1 3.76e-253 1 599 1 602

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4B8V_A 9.26e-06 34 140 44 169
ChainA, Extracellular Protein 6 [Fulvia fulva],4B9H_A Chain A, Extracellular Protein 6 [Fulvia fulva]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q5HRU2 1.75e-08 12 208 8 193
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) OX=176279 GN=sle1 PE=3 SV=1
Q8CMN2 1.75e-08 12 208 8 193
N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=sle1 PE=3 SV=1
P44493 1.12e-07 34 200 294 424
Probable N-acetylmuramoyl-L-alanine amidase AmiB OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=amiB PE=3 SV=1
O05495 1.02e-06 32 132 2 93
Putative sporulation-specific glycosylase YdhD OS=Bacillus subtilis (strain 168) OX=224308 GN=ydhD PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000228 0.999057 0.000248 0.000162 0.000148 0.000134

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001599_00563.