CAZyme Information: MGYG000001616_01405

Basic Information

• Species: Dysosmobacter sp900544955
• Lineage: Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; Dysosmobacter; Dysosmobacter sp900544955
• CAZyme ID: MGYG000001616_01405
• CAZy Family: GH25
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
561		61000.94	4.1336

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001616	2795503	MAG	China	Asia

• Gene Location: Start: 46233; End: 47918 Strand: +

Full Sequence      

MRHFRLPRRLTAAALAAALAMLPAAAFSDTEGHWAQGAISKWSQEYSLIQGYEDGTFRPD
NSITRGAFAGIMDRFLQFRAVSPAETFSDTAGTYWESAILKLHAAGVYLGNGGKALAGDT
ITRQQAVTMIARAFSITGDAEVALPYGDGDLVAEYARGAVAEMSARGYITDTWNGDFRPG
EPITRAEIVNILNNMIQVLVQESGTYSGDQAGTVMINAAGGAELMNMTIAGDLILAPGVT
GPVTLTDVTIAGSVRNFSGVEPTVVTTQPEETPVTPEDPGHPEDPEVVPPEPEGPGIRPS
EVYTPGATNGETFLYSNQQIPVYADRAPSQLYPGDFYWEEDRLVYAGDAFRTRFGIDVSA
YQNRASENETIDWQAVADDGVEFAMVRIGLRGYSNGAIHADAFYRENIQGAMDAGIETGV
YFFAQAITVEEAIEEADFVIGLLRDLDINGPVAYDWEMHDATYRVYGTSPEMATACAVAF
CQRVAEAGYTPMVYAGSYVSYVKYDQGAIAPYLSWYPEYKSASSEKLYPAFYYQMDYWQF
SSSCSINGIGGRVDANIQFLR

Enzyme Prediction     

No EC number prediction in MGYG000001616_01405.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH25	356	549	2.1e-35	0.9943502824858758

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd06414	GH25_LytC-like	1.54e-62	353	559	1	191	The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
cd00599	GH25_muramidase	3.97e-24	355	557	2	185	Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
pfam01183	Glyco_hydro_25	1.17e-18	356	549	1	180	Glycosyl hydrolases family 25.
cd06415	GH25_Cpl1-like	1.76e-16	355	557	3	193	Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase activity. The Cpl-7 lysin is also included here as is LysB of Lactococcus phage, and the Mur lysin of Lactobacillus phage.
cd06525	GH25_Lyc-like	8.91e-16	355	556	2	182	Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BCK85948.1	1.08e-270	1	560	1	548
QUO37824.1	3.73e-254	1	559	1	556
QCI60549.1	2.72e-246	8	561	4	545
BAK99312.1	4.71e-190	1	560	1	542
QNL45744.1	1.19e-185	13	560	12	543

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P38536	6.10e-08	27	136	1682	1791	Amylopullulanase OS=Thermoanaerobacterium thermosulfurigenes OX=33950 GN=amyB PE=3 SV=2
P36917	6.61e-07	27	125	1056	1154	Endo-1,4-beta-xylanase A OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynA PE=1 SV=1
Q06853	2.22e-06	27	95	590	658	Cell surface glycoprotein 2 OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=Cthe_3079 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.002120	0.996141	0.000475	0.000519	0.000358	0.000346

TMHMM  Annotations     

There is no transmembrane helices in MGYG000001616_01405.