dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000001639_03240

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Basic Information help

Species

Haloferax massiliensis

Lineage

Archaea; Halobacteriota; Halobacteria; Halobacteriales; Haloferacaceae; Haloferax; Haloferax massiliensis

CAZyme ID

MGYG000001639_03240

CAZy Family

CBM16

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1738	MGYG000001639_4\|CGC4	186393.47	3.7419

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001639	3991467	Isolate	not provided	not provided

Gene Location

Start: 167445; End: 172661 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000001639_03240.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
CBM16	1419	1560	3.4e-27	0.9310344827586207
CBM16	1089	1228	1.3e-25	0.896551724137931
CBM16	1263	1393	2.5e-25	0.9655172413793104

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam06283	ThuA	5.92e-37	248	436	30	213	Trehalose utilisation. This family consists of several bacterial ThuA like proteins. ThuA appears to be involved in utilisation of trehalose. The thuA and thuB genes form part of the trehalose/sucrose transport operon thuEFGKAB, which is located on the pSymB megaplasmid. The thuA and thuB genes are induced in vitro by trehalose but not by sucrose and the extent of its induction depends on the concentration of trehalose available in the medium.
TIGR02604	Piru_Ver_Nterm	4.17e-24	531	882	21	367	putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) (SP\|Q44091) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
COG3828	COG3828	2.23e-11	286	435	65	213	Type 1 glutamine amidotransferase (GATase1)-like domain [General function prediction only].
pfam02018	CBM_4_9	5.26e-08	1089	1223	2	114	Carbohydrate binding domain. This family includes diverse carbohydrate binding domains.
pfam02018	CBM_4_9	5.26e-08	1262	1391	2	126	Carbohydrate binding domain. This family includes diverse carbohydrate binding domains.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AKU09421.1	0.0	1	1736	1	1737
ADE01485.1	0.0	1	1736	1	1733
QNN20905.1	1.18e-246	219	1255	33	1001
QOV88701.1	2.53e-206	215	1256	33	1013
APZ93378.1	2.51e-175	218	1068	32	874

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
D4GPK6	8.82e-06	67	112	533	578	Laccase OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) OX=309800 GN=lccA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as TAT

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000006	0.000007	0.000003	0.976457	0.023513	0.000000

TMHMM Annotations help

There is no transmembrane helices in MGYG000001639_03240.