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CAZyme Information: MGYG000001649_00560

You are here: Home > Sequence: MGYG000001649_00560

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UBA1409 sp900760125
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; UBA1409; UBA1409 sp900760125
CAZyme ID MGYG000001649_00560
CAZy Family GH5
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
371 42640.32 4.197
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001649 2605663 MAG United States North America
Gene Location Start: 23408;  End: 24523  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001649_00560.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH5 46 336 2.5e-45 0.9901639344262295

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd21510 agarase_cat 5.27e-04 165 273 82 189
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16471.1 2.18e-112 12 365 8 361
ADD61974.1 7.42e-106 26 366 63 406
CCO03823.1 2.24e-105 26 366 54 397
AGS51602.1 3.28e-104 26 365 38 388
ADU21807.1 1.02e-97 31 366 72 408

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VUP_A 7.15e-23 33 353 1 343
Beta-1,4-mannanasefrom the common sea hare Aplysia kurodai [Aplysia kurodai],3VUP_B Beta-1,4-mannanase from the common sea hare Aplysia kurodai [Aplysia kurodai]
5Y6T_A 1.99e-15 36 341 10 335
ChainA, endo-1,4-beta-mannanase [Eisenia fetida]
3ZIZ_A 1.28e-06 31 336 13 322
ChainA, Gh5 Endo-beta-1,4-mannanase [Podospora anserina]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000000 0.000004 1.000054 0.000000 0.000000 0.000000

TMHMM  Annotations      download full data without filtering help

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