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CAZyme Information: MGYG000001671_02455

You are here: Home > Sequence: MGYG000001671_02455

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species HGM11507 sp900761005
Lineage Bacteria; Firmicutes_A; Clostridia; UMGS1840; UMGS1840; HGM11507; HGM11507 sp900761005
CAZyme ID MGYG000001671_02455
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
460 MGYG000001671_129|CGC1 51367.24 5.4715
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001671 3303038 MAG United States North America
Gene Location Start: 5280;  End: 6662  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001671_02455.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 188 440 5.5e-40 0.7569230769230769

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.38e-12 138 406 118 393
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 1.26e-09 182 398 126 326
polygalacturonase
pfam00295 Glyco_hydro_28 1.26e-08 250 406 114 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
pfam13229 Beta_helix 2.22e-05 224 314 49 136
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
pfam13229 Beta_helix 0.001 247 373 3 112
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QTH43708.1 5.41e-141 7 460 8 467
AWW32777.1 1.34e-53 3 457 27 497
ALJ04708.1 1.29e-51 3 406 42 439
SDS06655.1 6.46e-51 3 460 39 510
APA66227.1 1.89e-50 3 460 26 497

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 3.71e-12 81 376 33 370
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000039 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001671_02455.