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CAZyme Information: MGYG000001673_01911

You are here: Home > Sequence: MGYG000001673_01911

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UMGS1537 sp900552695
Lineage Bacteria; Firmicutes_A; Clostridia; UBA1212; UBA1255; UMGS1537; UMGS1537 sp900552695
CAZyme ID MGYG000001673_01911
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1186 131255.09 4.4747
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001673 2567696 MAG United States North America
Gene Location Start: 9877;  End: 13437  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001673_01911.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 684 924 4.7e-23 0.5661538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.65e-21 628 924 77 367
Polygalacturonase [Carbohydrate transport and metabolism].
pfam12708 Pectate_lyase_3 6.85e-04 629 690 4 58
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QGA23464.1 3.20e-183 371 1055 71 745
QCD41820.1 3.17e-115 418 992 248 834
ADB48561.1 1.11e-41 624 1091 25 474
QYH35737.1 4.20e-39 623 1124 122 631
QGQ94767.1 3.38e-38 624 1103 34 507

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4MXN_A 8.42e-10 632 847 25 213
Crystalstructure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_B Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_C Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184],4MXN_D Crystal structure of a putative glycosyl hydrolase (PARMER_00599) from Parabacteroides merdae ATCC 43184 at 1.95 A resolution [Parabacteroides merdae ATCC 43184]
5OLP_A 5.85e-09 620 880 38 294
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000595 0.998256 0.000488 0.000258 0.000193 0.000173

TMHMM  Annotations      download full data without filtering help

start end
1156 1178