logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001681_00696

You are here: Home > Sequence: MGYG000001681_00696

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus sp900761275
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; Ruminococcus sp900761275
CAZyme ID MGYG000001681_00696
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
550 60004.36 5.8068
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001681 2557345 MAG United States North America
Gene Location Start: 9316;  End: 10968  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001681_00696.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 267 451 4.8e-57 0.9076923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 7.98e-41 190 520 33 341
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 1.58e-20 263 455 10 190
Amb_all domain.
pfam00544 Pec_lyase_C 3.16e-18 265 448 30 208
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam14200 RicinB_lectin_2 6.44e-09 82 184 2 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 8.70e-268 32 540 27 538
CDM68184.1 1.83e-112 44 540 32 503
AKQ74328.1 2.32e-98 37 521 27 479
BCE07889.1 9.13e-98 37 521 27 479
BCE15879.1 9.13e-98 37 521 27 479

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 1.69e-12 203 445 14 226
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 5.40e-61 190 529 35 345
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 1.64e-58 190 529 35 345
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 8.71e-52 190 521 10 304
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 1.01e-42 187 523 7 308
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q00645 7.62e-14 196 431 39 237
Pectate lyase plyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001391 0.997078 0.000881 0.000236 0.000201 0.000183

TMHMM  Annotations      download full data without filtering help

start end
9 26