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CAZyme Information: MGYG000001683_00100

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Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Frisingicoccus;
CAZyme ID MGYG000001683_00100
CAZy Family GH0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
415 MGYG000001683_3|CGC1 46142.78 4.2903
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001683 2591996 MAG United States North America
Gene Location Start: 12690;  End: 13937  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001683_00100.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01471 PG_binding_1 1.98e-14 340 398 1 54
Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
COG3409 PGRP 1.13e-09 335 401 39 102
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
COG3409 PGRP 2.30e-08 331 398 117 180
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
TIGR02669 SpoIID_LytB 1.06e-04 177 311 117 260
SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]
pfam13620 CarboxypepD_reg 0.002 17 101 6 73
Carboxypeptidase regulatory-like domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QRT50293.1 6.58e-202 8 415 11 419
QJU21247.1 1.69e-201 10 414 11 415
QIX92999.1 4.82e-201 10 414 11 415
ASN94441.1 6.85e-201 10 414 11 415
QRP40879.1 6.85e-201 10 414 11 415

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

1.000051 0.000006 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001683_00100.