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CAZyme Information: MGYG000001701_02120

You are here: Home > Sequence: MGYG000001701_02120

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Corynebacterium afermentans
Lineage Bacteria; Actinobacteriota; Actinomycetia; Mycobacteriales; Mycobacteriaceae; Corynebacterium; Corynebacterium afermentans
CAZyme ID MGYG000001701_02120
CAZy Family CE1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
651 MGYG000001701_39|CGC1 70476.68 5.1857
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001701 2240769 Isolate France Europe
Gene Location Start: 97155;  End: 99110  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001701_02120.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CE1 103 373 3.5e-53 0.9779735682819384

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG0627 FrmB 3.85e-68 101 379 47 316
S-formylglutathione hydrolase FrmB [Defense mechanisms].
COG5479 Psp3 3.68e-50 417 649 124 374
Uncharacterized conserved protein, contains LGFP repeats [Function unknown].
pfam00756 Esterase 5.16e-40 101 371 1 246
Putative esterase. This family contains Esterase D. However it is not clear if all members of the family have the same function. This family is related to the pfam00135 family.
pfam08310 LGFP 1.26e-20 457 508 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].
pfam08310 LGFP 5.51e-16 563 613 1 52
LGFP repeat. This 54 amino acid repeat is found in many hypothetical proteins. Several hypothetical proteins from C.glutamicum and C.efficiens along with PS1 protein contain this repeat region. The N-terminus region of PS1 contains an esterase domain which transfers corynomycolic acid. The C-terminus region consists of 4 tandem LGFP repeats. It is hypothesized that the PS1 proteins in Corynebacterium, when associated with the cell wall, may be anchored via the LGFP tandem repeats that may be important for maintaining cell wall integrity [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16]. Deletion of Corynebacterium glutamicum csp1 protein results in a 10-fold increase in the cell volume of the organism and infers the corresponding proteins involvement in the cell shape formation. The secondary structure of each repeat is predicted to comprise two beta-strands and one alpha-helix [Adindla et al. 2004].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNP90090.1 0.0 1 650 1 646
AIL97638.1 0.0 69 649 1 581
AIJ34335.1 0.0 13 646 17 649
SNV85099.1 0.0 13 646 17 649
AOX04906.1 0.0 1 650 1 647

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SX4_AAA 2.01e-262 50 647 16 611
ChainAAA, Protein PS1 [Corynebacterium glutamicum],6SX4_BBB Chain BBB, Protein PS1 [Corynebacterium glutamicum],6SX4_CCC Chain CCC, Protein PS1 [Corynebacterium glutamicum],6SX4_DDD Chain DDD, Protein PS1 [Corynebacterium glutamicum]
6SWZ_AAA 2.24e-94 401 647 7 249
ChainAAA, Protein PS1 [Corynebacterium glutamicum]
7MYG_A 8.20e-48 130 375 30 276
ChainA, Diacylglycerol acyltransferase [Mycobacterium tuberculosis],7MYG_B Chain B, Diacylglycerol acyltransferase [Mycobacterium tuberculosis]
1DQZ_A 8.67e-48 130 375 32 278
ChainA, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis],1DQZ_B Chain B, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis]
1DQY_A 9.42e-48 130 375 35 281
ChainA, PROTEIN (ANTIGEN 85-C) [Mycobacterium tuberculosis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1D6 3.24e-270 11 647 22 654
Protein PS1 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=csp1 PE=1 SV=1
P0C1D7 6.11e-268 11 647 22 654
Protein PS1 OS=Corynebacterium melassecola OX=41643 GN=csp1 PE=4 SV=1
Q49575 1.30e-46 128 375 74 322
Diacylglycerol acyltransferase/mycolyltransferase Ag85B OS=Mycobacterium intracellulare (strain ATCC 13950 / DSM 43223 / JCM 6384 / NCTC 13025 / 3600) OX=487521 GN=fbpB PE=3 SV=2
P0A4V5 6.11e-46 130 375 80 326
Diacylglycerol acyltransferase/mycolyltransferase Ag85C OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=fbpC PE=3 SV=1
P9WQN9 6.11e-46 130 375 80 326
Diacylglycerol acyltransferase/mycolyltransferase Ag85C OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=fbpC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000397 0.998783 0.000204 0.000224 0.000194 0.000165

TMHMM  Annotations      download full data without filtering help

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