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CAZyme Information: MGYG000001713_02634

You are here: Home > Sequence: MGYG000001713_02634

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Vibrio furnissii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Vibrionaceae; Vibrio; Vibrio furnissii
CAZyme ID MGYG000001713_02634
CAZy Family CBM50
CAZyme Description putative L,D-transpeptidase YcfS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
308 34326.55 5.0966
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001713 4958658 Isolate Japan Asia
Gene Location Start: 620090;  End: 621016  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001713_02634.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK10260 PRK10260 5.13e-94 1 297 3 305
L,D-transpeptidase; Provisional
PRK10190 PRK10190 2.82e-85 2 305 1 310
L,D-transpeptidase; Provisional
COG1376 ErfK 1.04e-51 3 234 5 232
Lipoprotein-anchoring transpeptidase ErfK/SrfK [Cell wall/membrane/envelope biogenesis].
cd16913 YkuD_like 6.12e-41 96 231 2 121
L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.
pfam17969 Ldt_C 6.30e-25 234 297 1 67
L,D-transpeptidase C-terminal domain. This is the C-terminal domain found in d-transpeptidases (Ldt) homologues from E.coli. Three of these enzymes (YbiS, ErfK, YcfS) have been shown to cross-link Braun's lipoprotein to the peptidoglycan (PG), while the other two (YnhG, YcbB) form direct meso-diaminopimelate (DAP-DAP, or 3-3) cross-links within the PG. Family members include erfK (ldtA), ybiS (ldtB), ycfS (ldtC), and ynhG (ldtE).

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUY00823.1 1.63e-168 4 305 4 304
QPC55488.1 1.63e-168 4 305 4 304
QTV10206.1 1.63e-168 4 305 4 304
QLK92159.1 1.63e-168 4 305 4 304
QTV04013.1 1.63e-168 4 305 4 304

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4LZH_A 2.39e-71 21 297 3 284
ChainA, L,D-transpeptidase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P75954 1.12e-93 10 297 17 310
Probable L,D-transpeptidase YcfS OS=Escherichia coli (strain K12) OX=83333 GN=ycfS PE=1 SV=1
P76193 5.73e-84 2 299 6 304
Probable L,D-transpeptidase YnhG OS=Escherichia coli (strain K12) OX=83333 GN=ynhG PE=1 SV=1
P39176 4.28e-75 2 299 1 304
Probable L,D-transpeptidase ErfK/SrfK OS=Escherichia coli (strain K12) OX=83333 GN=erfK PE=1 SV=2
P0AAX8 7.58e-75 4 257 6 260
Probable L,D-transpeptidase YbiS OS=Escherichia coli (strain K12) OX=83333 GN=ybiS PE=1 SV=1
P0AAX9 7.58e-75 4 257 6 260
Probable L,D-transpeptidase YbiS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=ybiS PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000271 0.998991 0.000182 0.000184 0.000183 0.000164

TMHMM  Annotations      download full data without filtering help

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