logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000001714_03095

You are here: Home > Sequence: MGYG000001714_03095

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Coprococcus_A catus
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus_A; Coprococcus_A catus
CAZyme ID MGYG000001714_03095
CAZy Family GH0
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
422 46734.37 4.2711
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001714 3463460 Isolate not provided not provided
Gene Location Start: 3268173;  End: 3269441  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001714_03095.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam01471 PG_binding_1 7.34e-14 347 408 1 57
Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.
COG3409 PGRP 1.45e-07 342 408 39 102
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
COG3409 PGRP 1.27e-05 338 410 117 185
Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases [Cell wall/membrane/envelope biogenesis].
TIGR02669 SpoIID_LytB 2.29e-05 295 318 237 260
SpoIID/LytB domain. This model describes a domain found typically in two or three proteins per genome in Cyanobacteria and Firmicutes, and sporadically in other genomes. One member is SpoIID of Bacillus subtilis. Another in B. subtilis is the C-terminal half of LytB, encoded immediately upstream of an amidase, the autolysin LytC, to which its N-terminus is homologous. Gene neighborhoods are not well conserved for members of this family, as many, such as SpoIID, are monocistronic. One early modelling-based study suggests a DNA-binding role for SpoIID, but the function of this domain is unknown. [Unknown function, General]

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QIX92999.1 2.33e-203 17 421 9 415
ANU48790.1 6.66e-203 17 421 9 415
QQR02302.1 6.66e-203 17 421 9 415
ASN94441.1 1.27e-200 17 421 9 415
QRP40879.1 1.27e-200 17 421 9 415

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000040 0.000017 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001714_03095.