CAZyme Information: MGYG000001746_00006

Basic Information

• Species: CAG-273 sp900752095
• Lineage: Bacteria; Firmicutes_A; Clostridia; TANB77; CAG-508; CAG-273; CAG-273 sp900752095
• CAZyme ID: MGYG000001746_00006
• CAZy Family: GH25
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
422	MGYG000001746_1|CGC1	47921.6	9.1534

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001746	1549413	MAG	Sweden	Europe

• Gene Location: Start: 4627; End: 5895 Strand: +

Full Sequence      

MCSIKEIFHKIKKMILILLSIVILLCYVLPIQVMAFGPSNNTIYQGIDVSGYQRNIDFKK
VKEDGIEIVYIKASEGSNYIDSHFERNYQQARKHGLKIGFYHYVTARTEEQARKQAQFFV
SVISGKVADCKLAMDFESFGSLTREEINRIGLAFMQTVEQLSGKETILYSNAYTANTIWR
GKLTKYPLWVAQYGVNEPQNNGTWSSWAGWQYTDMGEVNGISTYVDRNQFTKEVLLNETQ
PVPPVEKPEEGENGGNTGEGNTPTTNTKKITIKWGDTLSELAIKYNTTVTELVRLNSIQN
PNLIYAGETLIVPSTNNQTGQSQVYTVKRGDTLSEIAVKYNTTVQAIAQDNNIKNINLIY
PGQKLVIRDTCRYDCGHRLYTVKPGDSLWTIARRYNTTIANIVRLNRIQNPRLIYPGQVF
RI

Enzyme Prediction     

No EC number prediction in MGYG000001746_00006.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH25	47	221	3.5e-53	0.9943502824858758
CBM50	380	422	7.1e-17	0.95
CBM50	325	367	5.8e-16	0.95

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd06525	GH25_Lyc-like	6.94e-74	45	230	1	184	Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
cd00599	GH25_muramidase	2.65e-61	45	230	1	186	Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
pfam01183	Glyco_hydro_25	6.37e-53	47	221	1	180	Glycosyl hydrolases family 25.
cd06414	GH25_LytC-like	3.33e-48	45	228	2	188	The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
COG3757	Acm	9.65e-45	36	230	53	253	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family [Cell wall/membrane/envelope biogenesis].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QJS18123.1	4.96e-122	18	421	5	395
QWT55024.1	1.76e-121	9	418	3	404
QIB56830.1	1.82e-107	32	422	22	402
QMW80393.1	1.82e-107	32	422	22	402
QBE96304.1	2.58e-107	32	422	22	402

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4KRU_A	3.69e-49	45	239	21	216	X-raystructure of catalytic domain of endolysin from clostridium perfringens phage phiSM101 [Clostridium phage phiSM101]
4KRT_A	1.04e-47	45	239	21	216	X-raystructure of endolysin from clostridium perfringens phage phiSM101 [Clostridium phage phiSM101],4KRT_B X-ray structure of endolysin from clostridium perfringens phage phiSM101 [Clostridium phage phiSM101]
1JFX_A	3.36e-24	45	230	6	202	Crystalstructure of the bacterial lysozyme from Streptomyces coelicolor at 1.65 A resolution [Streptomyces coelicolor]
5A6S_A	1.17e-23	38	235	16	206	Crystalstructure of the CTP1L endolysin reveals how its activity is regulated by a secondary translation product [Clostridium phage phiCTP1]
2WAG_A	7.46e-18	45	230	17	206	TheStructure of a family 25 Glycosyl hydrolase from Bacillus anthracis. [Bacillus anthracis str. Ames]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P26836	1.50e-48	37	235	3	201	Probable autolytic lysozyme OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=lyc PE=3 SV=2
P34020	9.96e-32	45	244	2	194	Autolytic lysozyme OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=lyc PE=1 SV=1
P76421	3.18e-31	38	230	62	254	Uncharacterized protein YegX OS=Escherichia coli (strain K12) OX=83333 GN=yegX PE=3 SV=2
Q8FFY2	3.18e-31	38	230	62	254	Uncharacterized protein YegX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yegX PE=3 SV=2
Q8X7H0	6.12e-31	38	230	62	254	Uncharacterized protein YegX OS=Escherichia coli O157:H7 OX=83334 GN=yegX PE=3 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.035547	0.962642	0.000847	0.000332	0.000295	0.000316

TMHMM  Annotations     

start	end
13	35