dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000001748_00709

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Basic Information help

Species

CAG-56 sp900762665

Lineage

Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; CAG-56; CAG-56 sp900762665

CAZyme ID

MGYG000001748_00709

CAZy Family

GH106

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1281		142278.56	4.9738

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000001748	4218051	MAG	Sweden	Europe

Gene Location

Start: 15337; End: 19182 Strand: +

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000001748_00709.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH106	84	858	2.2e-74	0.8058252427184466

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam17132	Glyco_hydro_106	2.89e-20	198	818	285	872	alpha-L-rhamnosidase.
cd00063	FN3	1.72e-05	1194	1260	8	77	Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
pfam00041	fn3	2.89e-04	1188	1262	1	78	Fibronectin type III domain.
smart00060	FN3	4.84e-04	1188	1260	2	77	Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
pfam07554	FIVAR	0.002	1095	1155	5	68	FIVAR domain. This domain is found in a wide variety of contexts, but mostly occurring in cell wall associated proteins. A lack of conserved catalytic residues suggests that it is a binding domain. From context, possible substrates are hyaluronate or fibronectin (personal obs: C Yeats). This is further evidenced by. Possibly the exact substrate is N-acetyl glucosamine. Finding it in the same protein as pfam05089 further supports this proposal. It is found in the C-terminal part of Bacillus sp. Gellan lyase, which is removed during maturation. Some of the proteins it is found in are involved in methicillin resistance. The name FIVAR derives from Found In Various Architectures.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QGH71057.1	1.57e-240	52	1102	55	1152
AHF25191.1	7.38e-208	32	1084	10	1153
QGH70002.1	5.88e-173	48	1078	57	1110
QYN20448.1	1.06e-159	52	1049	23	1087
SDS67158.1	1.51e-145	87	1049	11	943

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6Q2F_A	2.78e-19	244	1046	401	1103	Structureof Rhamnosidase from Novosphingobium sp. PP1Y [Novosphingobium sp. PP1Y]
5MQM_A	1.10e-06	321	1045	436	1061	Glycosidehydrolase BT_0986 [Bacteroides thetaiotaomicron],5MQN_A Glycoside hydrolase BT_0986 [Bacteroides thetaiotaomicron]
5MWK_A	1.90e-06	348	1045	455	1061	Glycosidehydrolase BT_0986 [Bacteroides thetaiotaomicron]

Swiss-Prot Hits help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.995891	0.003528	0.000130	0.000388	0.000042	0.000014

TMHMM Annotations download full data without filtering help

start	end
48	70