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CAZyme Information: MGYG000001757_01998

You are here: Home > Sequence: MGYG000001757_01998

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus sp900540005
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus; Ruminococcus sp900540005
CAZyme ID MGYG000001757_01998
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
923 99584.41 4.5758
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001757 2373085 MAG Sweden Europe
Gene Location Start: 4414;  End: 7185  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001757_01998.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 264 448 1e-57 0.9076923076923077
CBM13 563 709 2.1e-21 0.6808510638297872

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 8.93e-44 187 524 33 341
Pectate lyase [Carbohydrate transport and metabolism].
pfam00544 Pec_lyase_C 3.54e-21 262 448 30 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
smart00656 Amb_all 4.74e-18 260 449 10 187
Amb_all domain.
pfam14200 RicinB_lectin_2 5.56e-15 607 696 5 89
Ricin-type beta-trefoil lectin domain-like.
cd14256 Dockerin_I 1.15e-13 865 918 3 56
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16867.1 0.0 6 899 6 893
CDM68184.1 3.98e-119 34 627 26 585
CDM70399.1 3.37e-101 7 706 1 691
CBL17651.1 7.91e-98 36 899 32 873
AKQ74328.1 3.51e-94 37 528 30 482

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 2.01e-12 202 425 11 212
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 2.78e-62 186 527 34 339
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 6.84e-61 186 527 34 339
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 1.42e-50 187 528 10 307
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 3.83e-45 200 528 12 309
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q00645 1.47e-15 193 493 39 304
Pectate lyase plyB OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000259 0.999084 0.000179 0.000161 0.000146 0.000135

TMHMM  Annotations      download full data without filtering help

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