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CAZyme Information: MGYG000001806_02211

You are here: Home > Sequence: MGYG000001806_02211

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Prevotella sp900553965
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900553965
CAZyme ID MGYG000001806_02211
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
995 106731.8 4.4328
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001806 3097082 MAG Denmark Europe
Gene Location Start: 2483;  End: 5470  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001806_02211.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 73 246 9.1e-44 0.994535519125683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 4.96e-09 5 246 12 273
Pectate lyase [Carbohydrate transport and metabolism].
pfam00041 fn3 5.84e-06 423 501 3 85
Fibronectin type III domain.
cd00063 FN3 7.15e-06 423 506 4 91
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
pfam00544 Pec_lyase_C 4.02e-05 67 228 1 198
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
pfam18884 TSP3_bac 5.66e-05 371 390 1 20
Bacterial TSP3 repeat. This entry contains a novel bacterial thrombospondin type 3 repeat which differs from the typical consensus by containing a glutamate in place of one of the calcium binding aspartate residues.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AGB28750.1 7.33e-223 18 687 17 691
AEV97712.1 4.22e-114 20 413 20 413
BAV04561.1 5.50e-113 20 413 19 412
AYD47633.1 2.85e-104 21 353 21 357
AKC84019.1 1.22e-103 24 431 36 461

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q5B297 2.23e-89 23 413 21 410
Probable pectate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyC PE=3 SV=1
Q0CLG7 1.53e-84 23 413 21 413
Probable pectate lyase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyC PE=3 SV=1
B8NQQ7 2.95e-84 23 413 21 413
Probable pectate lyase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=plyC PE=3 SV=1
Q2UB83 5.64e-83 23 413 21 413
Probable pectate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=plyC PE=3 SV=1
B0XMA2 1.55e-82 5 413 7 414
Probable pectate lyase C OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000740 0.998192 0.000284 0.000290 0.000253 0.000225

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001806_02211.