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CAZyme Information: MGYG000001809_02538

You are here: Home > Sequence: MGYG000001809_02538

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella;
CAZyme ID MGYG000001809_02538
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
802 MGYG000001809_48|CGC1 90719.66 5.6664
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001809 3938122 MAG Denmark Europe
Gene Location Start: 10927;  End: 13335  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001809_02538.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 359 736 2.9e-60 0.9353846153846154

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 3.76e-48 327 662 73 404
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.03e-13 498 662 87 246
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN03003 PLN03003 3.49e-11 494 662 137 297
Probable polygalacturonase At3g15720
PLN02218 PLN02218 6.20e-11 309 662 26 351
polygalacturonase ADPG
PLN02793 PLN02793 3.00e-10 501 662 182 336
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AOZ96985.1 5.30e-132 308 794 11 528
QDA61631.1 3.96e-71 1 291 23 317
CCW36339.1 2.15e-53 339 800 31 470
QEE27992.1 2.37e-49 333 802 26 464
QVY66071.1 8.71e-49 335 794 22 466

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5OLP_A 7.87e-27 335 733 42 426
Galacturonidase[Bacteroides thetaiotaomicron VPI-5482],5OLP_B Galacturonidase [Bacteroides thetaiotaomicron VPI-5482]
3JUR_A 4.87e-16 325 617 15 316
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q02096 3.00e-10 501 662 211 365
Polygalacturonase OS=Persea americana OX=3435 PE=2 SV=1
P35338 1.02e-09 325 669 30 330
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1
P26216 3.14e-09 325 669 30 330
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1
Q9FY19 6.56e-08 505 662 193 343
Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1
P35339 9.15e-08 338 669 41 330
Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000062 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000001809_02538.