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CAZyme Information: MGYG000001810_02473
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Mediterraneibacter sp002314255 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter; Mediterraneibacter sp002314255 | |||||||||||
| CAZyme ID | MGYG000001810_02473 | |||||||||||
| CAZy Family | GH136 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 4760; End: 7879 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH136 | 244 | 738 | 8.7e-145 | 0.9938900203665988 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam18998 | Flg_new_2 | 4.36e-11 | 171 | 237 | 2 | 71 | Divergent InlB B-repeat domain. This family of domains are found in bacterial cell surface proteins. They are often found in tandem array. This domain is closely related to pfam09479. |
| COG3064 | TolA | 3.49e-05 | 766 | 998 | 59 | 301 | Membrane protein involved in colicin uptake [Cell wall/membrane/envelope biogenesis]. |
| pfam17161 | DUF5123 | 1.64e-04 | 606 | 698 | 3 | 112 | Domain of unknown function (DUF5123). |
| pfam13229 | Beta_helix | 0.002 | 426 | 610 | 9 | 157 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
| COG5283 | COG5283 | 0.006 | 837 | 1013 | 122 | 295 | Phage-related tail protein [Mobilome: prophages, transposons]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QUH27719.1 | 9.74e-143 | 240 | 739 | 30 | 508 |
| QXJ59585.1 | 6.99e-122 | 239 | 743 | 26 | 604 |
| AXG37184.1 | 8.58e-107 | 246 | 740 | 35 | 621 |
| QCT93619.1 | 1.10e-92 | 246 | 738 | 37 | 579 |
| ARV05068.1 | 2.00e-89 | 238 | 738 | 29 | 578 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7V6M_A | 6.30e-100 | 237 | 741 | 2 | 579 | ChainA, Fibronectin type III domain-containing protein [Tyzzerella nexilis] |
| 5GQC_A | 5.99e-84 | 241 | 738 | 15 | 596 | Crystalstructure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_C Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_D Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_E Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_F Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_G Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQC_H Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, ligand-free form [Bifidobacterium longum subsp. longum],5GQF_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQF_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, lacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_A Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum],5GQG_B Crystal structure of lacto-N-biosidase LnbX from Bifidobacterium longum subsp. longum, galacto-N-biose complex [Bifidobacterium longum subsp. longum] |
| 7V6I_A | 6.92e-80 | 241 | 741 | 11 | 611 | ChainA, Lacto-N-biosidase [Bifidobacterium saguini DSM 23967] |
| 6KQT_A | 4.34e-65 | 246 | 612 | 247 | 638 | CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - native protein [Eubacterium ramulus ATCC 29099] |
| 6KQS_A | 3.27e-63 | 246 | 612 | 247 | 638 | CrystalStructure of GH136 lacto-N-biosidase from Eubacterium ramulus - selenomethionine derivative [Eubacterium ramulus ATCC 29099] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| E8MGH9 | 1.53e-07 | 817 | 948 | 1667 | 1801 | Beta-L-arabinobiosidase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=hypBA2 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000290 | 0.998998 | 0.000250 | 0.000156 | 0.000142 | 0.000135 |
