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CAZyme Information: MGYG000001827_00288

You are here: Home > Sequence: MGYG000001827_00288

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species UMGS929 sp900546875
Lineage Bacteria; Firmicutes_A; Clostridia_A; Christensenellales; CAG-314; UMGS929; UMGS929 sp900546875
CAZyme ID MGYG000001827_00288
CAZy Family PL9
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1364 146577.94 4.0866
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000001827 1794009 MAG Denmark Europe
Gene Location Start: 105895;  End: 109989  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000001827_00288.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 902 1277 1e-126 0.976

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 9.71e-05 1026 1194 19 152
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
cd00063 FN3 3.20e-04 451 532 10 92
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
pfam13229 Beta_helix 0.005 1048 1194 9 128
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BCJ94249.1 5.17e-222 207 1311 93 1218
ABX44216.1 3.33e-203 306 1291 191 1197
AEE17572.1 1.39e-200 339 1285 29 987
AEJ18793.1 1.26e-173 339 1285 24 984
ADL35206.1 1.40e-172 83 1238 1213 2396

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 3.88e-41 906 1278 19 373
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 2.38e-14 902 1261 3 398
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P22751 2.63e-53 578 1183 80 643
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1
P0C1A7 3.61e-40 906 1278 44 398
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P0C1A6 1.34e-38 906 1278 44 398
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.039476 0.955840 0.003359 0.000633 0.000329 0.000324

TMHMM  Annotations      download full data without filtering help

start end
5 27
1334 1356